View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12621_low_5 (Length: 460)
Name: NF12621_low_5
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 7891114 - 7891549
Alignment:
| Q |
18 |
gaaaaattggaattgctatgaatgctatatggtatgaaccatttagcaactctacggaagacaagttagctgctgagagagctcaatcattttacatgaa |
117 |
Q |
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| T |
7891114 |
gaaaaattggaattgctatgaatgctatatggtatgaaccatttagcaactctacggaagacaagttagctgctgagagaactcaatcattttacatgaa |
7891213 |
T |
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| Q |
118 |
ttggtaaatgcttgatttattttttgttaatttgatgagttatatatatagctaagcttgtgactgagtccactatggagaaatgcaggtttttggaccc |
217 |
Q |
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| T |
7891214 |
ttggtaaatgcttgatttattttttgttaatttgatgagttatatatatagctaagcttgtgactgagtccactatggagaaatgcaggtttttggaccc |
7891313 |
T |
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| Q |
218 |
aataatactaggaaagtatccagcagaaatgcatgaaatattaggacctgacctcctagtattttccaaatatgataaagaaaaattcaagaatggatta |
317 |
Q |
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| T |
7891314 |
aataatactaggaaagtatccagcagaaatgcatgaaatattaggacctgacctcctagtattttccaaatatgataaagaaaaattcaagaatggatta |
7891413 |
T |
|
| Q |
318 |
gatttcattggaataaatcactatacaagttattatgtaaaagattgcatcttctctgcatgtgaacaaggaaaagggtcttcaaagacagagggttttg |
417 |
Q |
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| T |
7891414 |
gatttcattggaataaatcactatacaagttattatgtaaaagattgcatcttctctgcatgtgaacaaggaaaagggtcttcaaagacagagggttttg |
7891513 |
T |
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| Q |
418 |
ctctcacatctgcacaaatgaatgacaagagtattg |
453 |
Q |
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| T |
7891514 |
ctctcacatctgcacaaatgaatgacaagagtattg |
7891549 |
T |
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