View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12621_low_7 (Length: 371)
Name: NF12621_low_7
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 27320458 - 27320810
Alignment:
| Q |
1 |
ttatgtgttactctgatcagtgaaaaatcacaatctagatgagcacagtttattcgcaattgaatagaccattaattaatgagcaattaaaattgtaagg |
100 |
Q |
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| T |
27320458 |
ttatgtgttactctgatcagtgaaaaatcacaatctagatgagcacagtttattcgcaattgaatagaccattaatcaatgagcaattaaaattgtaagg |
27320557 |
T |
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| Q |
101 |
accaaaatcacatgttataactgttgataaaataaccgttttaaaagttataagagatatcatgaataatacttcgtatatcacggattgatttcagaca |
200 |
Q |
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| T |
27320558 |
accaaaatcacatgttataactgttgataaaataaccgttttaaaagttataagagatatcatgaataatacttcgtatatcacggattgatttcagaca |
27320657 |
T |
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| Q |
201 |
attttttctgctttaagaatcagagtgaggttcgaataaactaacatgaacttgccaaatatgttcatggacaaaactcaatttgcaggctcaaactaag |
300 |
Q |
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| T |
27320658 |
attttttctgctttaagaatcagagtgaggttcgaataaactaacatgaacttgccaaatatgttcatggacaaaactcaatttgcaagctcaaactaag |
27320757 |
T |
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| Q |
301 |
atttgatagagataactttaattcaaatgcactaattatatatacaaattttg |
353 |
Q |
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| T |
27320758 |
atttgatagagataactttaattcaaatgcactaattatatatacaaattttg |
27320810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 27321013 - 27321096
Alignment:
| Q |
263 |
gttcatggacaaaactcaatttgcaggctcaaactaagatttgatagagataa---ctttaattcaaatgcactaattatatat |
343 |
Q |
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| T |
27321013 |
gttcatggattaaacttaatttgcagactcaaactaagctttgagagagataagctatataattcatatgcactaattttatat |
27321096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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