View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12621_low_9 (Length: 358)
Name: NF12621_low_9
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_low_9 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 33048689 - 33049034
Alignment:
| Q |
13 |
cataggtggaccagttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33048689 |
cataggtggaccagttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggaga |
33048788 |
T |
|
| Q |
113 |
ggattttcaaaggaatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatgtcccttttgatgattgatctt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33048789 |
ggattttcaaaggaatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatgtcccttttgatgattgatctt |
33048888 |
T |
|
| Q |
213 |
agaaaacatagtttgcaaaattattaggcccggtttactttgagcaacattttcaaaccagctgagttacccaatcccccggtcacttggcttctagttt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33048889 |
agaaaacatagtttgcaaaattattaggcccggtttactttgagcaacattttcaaaccagttgagttacccaatcccccggtcacttggcttctagttt |
33048988 |
T |
|
| Q |
313 |
gaacactattagacttttgttgtttaatgaaagatccttatattat |
358 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
33048989 |
gaacactattagacttttgttatttaatgaaagatgcttatattat |
33049034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 33069773 - 33069948
Alignment:
| Q |
16 |
aggtggaccagttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagagga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
33069773 |
aggtggaccagttgcaacttctatttcactatggatatctatgatattagtaggtttttatatcttgtatgcaaagaagtttaagaatacatggagggga |
33069872 |
T |
|
| Q |
116 |
ttttcaaaggaatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatg |
191 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33069873 |
ttttcaatgcaatcatttcagtacttgtttacaaacttgaaactagctcttccctctgcagcaatgctatggtatg |
33069948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 33079741 - 33079916
Alignment:
| Q |
16 |
aggtggaccagttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagagga |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33079741 |
aggtggaccagttgcaatttctatttcactatggatatctatgatattggtaggtttttatatcttgtatgcaaagaagtttaagaatacatggagagga |
33079840 |
T |
|
| Q |
116 |
ttttcaaaggaatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatg |
191 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33079841 |
ttttcaatgcgatcatttcagtacttgtttacaaacttgaaactagctcttccctctgcagcaatgctatggtatg |
33079916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 33088225 - 33088372
Alignment:
| Q |
16 |
aggtggaccagttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagagga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| || |||| || ||||| ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33088225 |
aggtggaccagttgcaacttctatttcactatggatatcaatgataatgttaggatcatatgttatgtatgcaaagaagtttgagaatacgtggagggga |
33088324 |
T |
|
| Q |
116 |
ttttcaaaggaatcatttcagtacttgtttacaaacattaaactagct |
163 |
Q |
| |
|
||||||| | |||||||| | ||||||||| ||||||| ||||||||| |
|
|
| T |
33088325 |
ttttcaatgcaatcattttattacttgtttccaaacatgaaactagct |
33088372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 33095721 - 33095868
Alignment:
| Q |
16 |
aggtggaccagttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagagga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| || |||| || ||||| ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33095721 |
aggtggaccagttgcaacttctatttcactatggatatcaatgataatgttaggatcatatgttatgtatgcaaagaagtttgagaatacgtggagggga |
33095820 |
T |
|
| Q |
116 |
ttttcaaaggaatcatttcagtacttgtttacaaacattaaactagct |
163 |
Q |
| |
|
||||||| | |||||||| | ||||||||| ||||||| ||||||||| |
|
|
| T |
33095821 |
ttttcaatgcaatcattttattacttgtttccaaacatgaaactagct |
33095868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 33061803 - 33061981
Alignment:
| Q |
13 |
cataggtggaccagttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggaga |
112 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||||| |||||| || |||| | |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
33061803 |
cataggtggaccggttgccacttctatttcactctggatatcgatgataatgttaggattttatgtaatgtatgcaaagaagtttaagaatacatggaga |
33061902 |
T |
|
| Q |
113 |
ggattttcaaaggaatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatg |
191 |
Q |
| |
|
||||| || | | |||||||| | ||| ||||| ||||||| ||||||||| | || ||||| |||||||||||||||| |
|
|
| T |
33061903 |
ggattctccatgcaatcatttgattacctgtttgcaaacatgaaactagctttgccttctgctgcaatggtatggtatg |
33061981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 33062755 - 33062808
Alignment:
| Q |
302 |
gcttctagtttgaacactattagacttttgt---tgtttaatgaaagatcctta |
352 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
33062755 |
gcttctagtttgaacactatcagacttttgttgctgtttaatgtaagatcctta |
33062808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 18485814 - 18485964
Alignment:
| Q |
13 |
cataggtggaccagttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggaga |
112 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
18485814 |
cataggtggaccagttacaacttcgatttcactatggatatctttgatattggtaggattttatgtcttgtatgcaaagaagtttaaaaatatatggaga |
18485913 |
T |
|
| Q |
113 |
ggattttcaaaggaatcatttcagtacttgtttacaaacattaaactagct |
163 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
18485914 |
ggaatttcaatggaatcatttcagtacttgtttacaaacctaaaactagct |
18485964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University