View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_high_12 (Length: 435)
Name: NF12622_high_12
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 54816773 - 54817181
Alignment:
| Q |
19 |
ctaatcatatattaggacgcaatttagtacactttatttttcattgattctaaaagaagtacttttttggtttcccacgggttccctctaaggagggaat |
118 |
Q |
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| T |
54816773 |
ctaatcatatattaggacgcaatttagtacactttatttttcattgattataaaagaagtacttttttggtttcccacgggttccctctaaggagggaat |
54816872 |
T |
|
| Q |
119 |
cctatttgagccactatccgacacaaatcttcgttcggcatgttgtgggtgtctaggcactagacccatcccc--tggtctgaaggaagcaattcaatcg |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
54816873 |
cctatttgagccactatccgacacaaattttcgttcggcatgttgtgggtgtctaggcactagacccatccccgttggtctaaaggaagcaattcaatcg |
54816972 |
T |
|
| Q |
217 |
ggatagatcaaatttacttgattacacaaggtcatcgaattacttagaaaggtacatgcatatacatcattgacatctctctcttactctcaatctatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54816973 |
ggatagatcaaatttacttgattacacaaggtcatcgaattacttagaaaggtacatgaatatacatcattgacatctctctcttactctcaatctatct |
54817072 |
T |
|
| Q |
317 |
atgagcgggtcaaatcagaaaattgcatcaaagcacaagcaaatgtggccaatacggacacaattgcaattgtgaatgtgatgccattgtaaaacctcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54817073 |
atgagcgggtcaaatcagaaaattgcatcaaagcacaagcaaatgtggccaatacggacacaattgcaattgtgaatgtgatgccattgtaaaacctcta |
54817172 |
T |
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| Q |
417 |
taacctttg |
425 |
Q |
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||||||||| |
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| T |
54817173 |
taacctttg |
54817181 |
T |
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