View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12622_high_19 (Length: 308)
Name: NF12622_high_19
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 38356177 - 38356471
Alignment:
| Q |
1 |
cagacttccactcttcatctctgtaagaagaaaccttgatgcatgcttgtagtaaaaccaggtagagaaatatagattgtagaacacccatttgaaataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38356177 |
cagacttccactcttcatctctgtaagaagaaaccttgatgcatgcttgtagtaaaaccaggtagagaaatatagattgtagaacacccatttgaaacaa |
38356276 |
T |
|
| Q |
101 |
aaagttgnnnnnnncttctttctaatggaaacaataaacactaaacaagggaaagnnnnnnnncccttctttttataactgaaaatgatgtatatttcat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356277 |
aaagttgtttttttcttctttctaatggaaacaataaacactaaacaagggaga---aaaaaacccttctttttataactgaaaatgatgtatatttcat |
38356373 |
T |
|
| Q |
201 |
tgataaagaaaaagatagaagctttgacattttgaacccatgttttttgctttctaaccaggattcaaggttctactttgtaacttagtttgcctttg |
298 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356374 |
tgataaagtaaaagatagaagctttgacattttgaacccatgttttttgctttctaaccaggattcaaggttctactttgtaacttagtttgcctttg |
38356471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University