View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_high_27 (Length: 255)
Name: NF12622_high_27
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 11689020 - 11688797
Alignment:
| Q |
15 |
cacagaacttcctttaaatcttgttcaaatgacattacttgtcgaaattgatccactgaatcattgcgaattttcctttattctctttagtttgtgaatt |
114 |
Q |
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| T |
11689020 |
cacagaacttcctttaaatcttgttcaaatgacattacttgtcgaaattgatccactgaatcattgcgaatttccctttgttctctttagtttgtgaatt |
11688921 |
T |
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| Q |
115 |
tcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattccttctcagtataaggcagcaat |
214 |
Q |
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| T |
11688920 |
tcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattccttctcagtataaggcagcaat |
11688821 |
T |
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| Q |
215 |
agagcttaatctattggggtatgt |
238 |
Q |
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| T |
11688820 |
agagcttaatctattggggtatgt |
11688797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 30959128 - 30959238
Alignment:
| Q |
96 |
tctctttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattcctt |
195 |
Q |
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| T |
30959128 |
tctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctcttacacgaaaagaggcagcatttgctctcgaagcattcatgaaaatccctt |
30959227 |
T |
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| Q |
196 |
ctcagtataag |
206 |
Q |
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| T |
30959228 |
ctcagtataag |
30959238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 30955627 - 30955659
Alignment:
| Q |
102 |
tagtttgtgaatttcacggagattatgtcaaag |
134 |
Q |
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| T |
30955627 |
tagtttgtgaatttcacggaaattatgtcaaag |
30955659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 7474336 - 7474464
Alignment:
| Q |
99 |
ctttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattccttctc |
198 |
Q |
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| T |
7474336 |
ctttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctc |
7474435 |
T |
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| Q |
199 |
agtataaggcagcaatagagcttaatcta |
227 |
Q |
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| T |
7474436 |
agtataaggccgcaatagagcttaatcta |
7474464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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