View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_high_31 (Length: 237)
Name: NF12622_high_31
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 34465567 - 34465767
Alignment:
| Q |
13 |
acagaagccaaactcgagggtgtgcggtaggcgcgacaatagaagcctccattttgtaagaggcaccaatttctttttattagtatatataggcatcgtt |
112 |
Q |
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| T |
34465567 |
acagaagccaaactcgagggtgtgcggtaggcgcgacaatagaagcctccattttgtaagaggcaccaatttcttttc-tta------ataggcatcgtt |
34465659 |
T |
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| Q |
113 |
aatattgcatctaatgagagaagtttttcaaattgggaattgtttaaatatcttattttcacaaacgcacgaaatcgttgcaagtaataaattaaatcgg |
212 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34465660 |
aatattgcatctaatgagagaaatttttcaaattgggaattgtttaa--atcttattttcacaaacgcacgaaatcgttgcaagtaataaattaaatcgg |
34465757 |
T |
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| Q |
213 |
caatatcaag |
222 |
Q |
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||||||||| |
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| T |
34465758 |
taatatcaag |
34465767 |
T |
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