View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_high_32 (Length: 233)
Name: NF12622_high_32
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 42061014 - 42060796
Alignment:
| Q |
1 |
tagcaaaaagttgcccgagatatgtgctttggaggctatcgtcaatctcacttaaatgattacttgaaatgttactggctgacaaggtgttggggttaaa |
100 |
Q |
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|||||||||||| ||| | |||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42061014 |
tagcaaaaagtttccctatatattttctttggagtctatcatcaatctcacttaaatgattacttgaaatgttactggctgacaaggtgttggggttaaa |
42060915 |
T |
|
| Q |
101 |
gtaacttcatcttgagaaaactacgttagacgtaaagtttggcactgtgttgcagcagtgaaaacacgttgctgatagcagagaaaactacagttcgtgc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060914 |
gtaacttcatcttgagaaaactacgttagacgtaaagtttggcactgtgttgcagcagtgaaaacacgttgctgatagcagagaaaactacagttcgtgc |
42060815 |
T |
|
| Q |
201 |
gttttgtgcaaaaatatat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
42060814 |
gttttgtgcaaaaatatat |
42060796 |
T |
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