View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12622_high_33 (Length: 223)

Name: NF12622_high_33
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12622_high_33
NF12622_high_33
[»] chr8 (4 HSPs)
chr8 (15-110)||(18170887-18170982)
chr8 (15-110)||(18634455-18634550)
chr8 (175-206)||(18171028-18171059)
chr8 (175-206)||(18634596-18634627)
[»] chr2 (1 HSPs)
chr2 (25-110)||(6387561-6387646)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 18170887 - 18170982
Alignment:
Q  15 cacagaaccgatccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18170887 cacagaaccaatccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 18170982  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 18634455 - 18634550
Alignment:
Q  15 cacagaaccgatccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18634455 cacagaaccaatccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 18634550  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Original strand, 18171028 - 18171059
Alignment:
Q  175 gattcttcgaataggattacctccgttagaag 206  Q
    ||||||||||||||||||||||||||||||||    
T  18171028 gattcttcgaataggattacctccgttagaag 18171059  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Original strand, 18634596 - 18634627
Alignment:
Q  175 gattcttcgaataggattacctccgttagaag 206  Q
    ||||||||||||||||||||||||||||||||    
T  18634596 gattcttcgaataggattacctccgttagaag 18634627  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 6387561 - 6387646
Alignment:
Q  25 atccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 110  Q
    ||||| || ||||| |||||| ||||| ||||||||| || ||||||||||||||| |||||||| |||||||||||||| |||||    
T  6387561 atccaagttcttttggaatcagggtacatatctgcaattagatagttaaagcatcctgcacagtgcactgcaaacaaggttacctg 6387646  T

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