View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12622_high_4 (Length: 645)
Name: NF12622_high_4
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_high_4 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 26 - 645
Target Start/End: Complemental strand, 6969701 - 6969082
Alignment:
| Q |
26 |
cctcatgtaaaggccaatatgaaaatgagattttaatttacaaaagaacctaaagtattactacctgtttgaaatagtacctgaggaggatagatgtgta |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969701 |
cctcatgtaaaggccaatatgaaaatgagattttaatttacaaaagaacctaaagtattactacctgtttgaaatagtacctgaggaggatagatgtgta |
6969602 |
T |
|
| Q |
126 |
aaccatccatattcctcaaagaaatatttataataatcttttaatacctaggataaaagctaacatgataaagttttttaagctaaaaactatttattta |
225 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969601 |
aaccatccatattcctcaaagaagtatttataataatcttttaatacctaggataaaagctaacatgataaagttttttaagctaaaaactatttattta |
6969502 |
T |
|
| Q |
226 |
atgacttgcagaatagtatggtaatatgctatcagaagaacaaaacaaaatagggtatcaggtatcaacaaacatataaaagcacacacataaaacttgc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969501 |
atgacttgcagaatagtatggtaatatgctatcagaagaacaaaacaaaatagggtatcaggtatcaacaaacatataaaagcacacacataaaacttgc |
6969402 |
T |
|
| Q |
326 |
aatgcaaactaaacatatttataattcaacattgttaaccatctttttaatggtactaaatattcaacctactttgttataaggcctgaagtacattgtt |
425 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969401 |
actgcaaactaaacatatttataattcaacattgttaaccatctttttaatggtactaaatattcaacctactttgttataaggcctgaagtacattgtt |
6969302 |
T |
|
| Q |
426 |
tagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaat |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6969301 |
tagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataataaagtaaattaagactcgaatgtaagcatagaaat |
6969202 |
T |
|
| Q |
526 |
agagattcatagtaatgttttaataagactctaatataaaataactagcaatattgcctaggaattttcagccttctgcatcttctgcctccttctctga |
625 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969201 |
agagattcatactaatgttttaataagactctaatataaaataactagcaatattgcctaggaattttcagccttctgcatcttctgcctccttctctga |
6969102 |
T |
|
| Q |
626 |
tgaaccctcttcacctgtcc |
645 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6969101 |
tgaaccctcttcacctgtcc |
6969082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 466 - 588
Target Start/End: Original strand, 999959 - 1000088
Alignment:
| Q |
466 |
ttagcatattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatg------ttttaataagactct-- |
557 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||| | | ||| ||||| |||||||||||| || |
|
|
| T |
999959 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatact-atactaatgttttaattttaataagaccctaa |
1000057 |
T |
|
| Q |
558 |
aatataaaataactagcaatattgcctagga |
588 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
1000058 |
aatataaaataaccagcaatattgcctagga |
1000088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 560
Target Start/End: Complemental strand, 2178513 - 2178425
Alignment:
| Q |
471 |
atattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaat |
560 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||| | |||||||||||| |||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
2178513 |
atattaatctaact-ataataatctaaaataagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaat |
2178425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 569
Target Start/End: Original strand, 51315840 - 51315915
Alignment:
| Q |
494 |
gtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataa |
569 |
Q |
| |
|
||||| |||||||||| ||||| ||| |||||||| ||||||| ||| ||||| ||||||||||||| ||||||| |
|
|
| T |
51315840 |
gtaaaataagactctattgtaaacatggaaatagatattcatattaacgttttcataagactctaatgcaaaataa |
51315915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University