View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_high_8 (Length: 525)
Name: NF12622_high_8
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 101 - 522
Target Start/End: Complemental strand, 26562944 - 26562516
Alignment:
| Q |
101 |
ttatccctccctcttcattcttgttctttttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26562944 |
ttatccctccctcttcattcttgttctttttaaccatcaaagaaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatc |
26562845 |
T |
|
| Q |
201 |
aaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctccataaca |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26562844 |
aaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatttggaggacctccatttttctccataaca |
26562745 |
T |
|
| Q |
301 |
atgcacgccatctc--------ttcaaccctgctattgaacttaaaatcaatattgaggaatagatgatgttgttgttgggaagttgagattgaaggaag |
392 |
Q |
| |
|
|||||||||||||| |||||||||| | |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
26562744 |
atgcacgccatctcttcatctcttcaaccctgttcttgaacttaaaatcaatattgaggaataaat-atgttgttgttgggaagttgagattgaaggaag |
26562646 |
T |
|
| Q |
393 |
tcgagcttatcttgatcacgtgaacatccaataatggtgtggtcgtgataagccaattcaatcgcaagagcccttccaaggcctttgctaacaccagtta |
492 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
26562645 |
tcgagcttatcttgatcacctgaacatccaataatggtgtggtcgtgataagccaattcaattgcaagagcccttccgaggcctttgctaacaccagtta |
26562546 |
T |
|
| Q |
493 |
tcatcactgttcgatttcctttgcttctcc |
522 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
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| T |
26562545 |
tcatcactgttcgatttcctttgctcctcc |
26562516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 513
Target Start/End: Original strand, 26560589 - 26561086
Alignment:
| Q |
20 |
cttcaatttcccatttggatgcaaagtaaggtgctacgagggcagcacctgatcttccccaacctgaagacatattcactattatccctccctcttcatt |
119 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
26560589 |
cttcaattgcccatttggatacacagtaaggtgctacaagtgcagcaactgatcttccccaacctgaagacatgttcactattatccctccctcttcata |
26560688 |
T |
|
| Q |
120 |
cttgttctttttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacc |
219 |
Q |
| |
|
||| || ||||||||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26560689 |
ctttttatttttaaccatcaaaggtatgaagggcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacc |
26560788 |
T |
|
| Q |
220 |
tcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctccataacaatgcacgccatctcttcaa |
319 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
26560789 |
tcccacatcttgttgttcttgttaacgactccggcgccgttcactataatatctgaaggacctccatttttctccataaaaatgcacgccatctcttcaa |
26560888 |
T |
|
| Q |
320 |
ccctgctattgaacttaaaatcaatattgaggaatagatgat-gttgttgttgggaagttgagattgaaggaagtcgagcttatcttgatcacgtgaaca |
418 |
Q |
| |
|
| ||| ||||| || ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||| |
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|
| T |
26560889 |
ctctgttattgcacctaacatcaatattgaggaatagatgatggttgttattgggaagttgagattgaaggaagtcgagtttatcctgatcacatgaaca |
26560988 |
T |
|
| Q |
419 |
tccaataatggtgtggtcgtgataagcc---aattcaatcgcaagagcccttccaaggcctttgctaacaccagttatcatcactgttcgatttcctt |
513 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||| ||||| ||||||| |||||||||||||| |||| | |||||| |||||||||||| |
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|
| T |
26560989 |
tccaataatggtgtggctgcgataagccaataattcaatcacaagaacccttccgaggcctttgctaacgttagttttaatcactattcgatttcctt |
26561086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 511
Target Start/End: Original strand, 24890048 - 24890543
Alignment:
| Q |
20 |
cttcaatttcccatttggatgcaaagtaaggtgctacgagggcagcacctgatcttccccaacctgaagacatattcactattatccctccctcttcatt |
119 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||| || || |||||||||||||||||||| |||||||| |||||||||||||||||| |||||| |
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|
| T |
24890048 |
cttcaattgcccatttggatgcacaataaggtgctacaagtgctgcacctgatcttccccaaccagaagacatgttcactattatccctcccatttcatt |
24890147 |
T |
|
| Q |
120 |
cttgttctttttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacc |
219 |
Q |
| |
|
||||||||| | ||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
24890148 |
cttgttcttggcgatcattagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacc |
24890247 |
T |
|
| Q |
220 |
tcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctccataacaatgcacgccatctcttcaa |
319 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
24890248 |
tcccacatcttactgttcttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctccataacaatgtgtgccatctcttcaa |
24890347 |
T |
|
| Q |
320 |
ccctgctattgaacttaaaatcaatattgaggaatagatgatg-ttgttgttgggaagttgagattgaaggaagtcgagctta---tcttgatcacgtga |
415 |
Q |
| |
|
| || |||| || ||| ||||| ||| |||||||||||| ||| || |||||||||||||||||||||||||||||||| || |||||||| || |
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|
| T |
24890348 |
cgttgtaattgcacctaacatcaacgctgatgaatagatgatgattggtgctgggaagttgagattgaaggaagtcgagcttattgtcatgatcacgaga |
24890447 |
T |
|
| Q |
416 |
acatccaataatggtgtggtcgtgataagccaattcaatcgcaagagcccttccaaggcctttgctaacaccagttatcatcactgttcgatttcc |
511 |
Q |
| |
|
|||||| |||||||||||| || ||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
24890448 |
acatccgataatggtgtggccgcgattagccaattcaattgcaagagcccttccgaggcccttgctaacaccagttatcatcactgtttgatttcc |
24890543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 145 - 495
Target Start/End: Complemental strand, 56436896 - 56436542
Alignment:
| Q |
145 |
atgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgttaa |
244 |
Q |
| |
|
||||| || |||||||||||| || | ||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| | |
|
|
| T |
56436896 |
atgaaatgtctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttga |
56436797 |
T |
|
| Q |
245 |
tgactccagcgtcgttcactataatatctggaggacctccatttttctccataacaatgcacgccatctcttcaaccctgctattgaacttaaaatcaat |
344 |
Q |
| |
|
| || ||| |||||| |||| ||| || ||||| || || ||||||||||| ||| ||||||| || ||| ||| |||| | | | |||| |
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|
| T |
56436796 |
tagtacctgcgctgttcacaataacatcaggtggaccccccttcatctccataacagtgcgagccatctgttgaacgctgtcattggagctgacgtcaac |
56436697 |
T |
|
| Q |
345 |
attgaggaatagatgatgttg-ttgttgggaagt---tgagattgaaggaagtcgagcttatcttgatcacgtgaacatccaataatggtgtggtcgtga |
440 |
Q |
| |
|
||||||||| ||||||| || || || |||||| |||||||||| | || |||||||| ||| |||| ||||| || ||||||||||| | || |
|
|
| T |
56436696 |
attgaggaagagatgattatgattatttggaagtaaaagagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcga |
56436597 |
T |
|
| Q |
441 |
taagccaattcaatcgcaagagcccttccaaggcctttgctaacaccagttatca |
495 |
Q |
| |
|
| ||||||||||| ||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
56436596 |
ttcgccaattcaatagcaagagccctaccaattcctttgctaacaccagtaatca |
56436542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 26562998 - 26562943
Alignment:
| Q |
20 |
cttcaatttcccatttggatgcaaagtaaggtgctacgagggcagcacctgatctt |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26562998 |
cttcaatttcccatttggatgcaaagtaaggtgctacgagtgcagcacctgatctt |
26562943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 56437015 - 56436944
Alignment:
| Q |
20 |
cttcaatttcccatttggatgcaaagtaaggtgctacgagggcagcacctgatcttccccaacctgaagaca |
91 |
Q |
| |
|
||||||| |||||||||||||| ||||||| || || || || ||||| |||||||||||||| ||||||| |
|
|
| T |
56437015 |
cttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatcttccccaaccagaagaca |
56436944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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