View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_1 (Length: 787)
Name: NF12622_low_1
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 310 - 772
Target Start/End: Original strand, 37592444 - 37592899
Alignment:
| Q |
310 |
cgagggcaacaaattaaaccgtttgatctccattctaattaaatatcaatcatgatacaatgaatatgttgtacacagaatgcgtcaactttgaataatt |
409 |
Q |
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| T |
37592444 |
cgagggcaacagattaaaccgtttgatctccattctaattaaatat-------gatacaatgaatatgttgtacacagaatgcgtcaactttgaataatt |
37592536 |
T |
|
| Q |
410 |
catcacataatgtaaaactttcactttctttgagattttttcgtcgtcctttccnnnnnnngttgataaaaaatttcaaagtccattccggctgctaaca |
509 |
Q |
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| T |
37592537 |
catcacataatgtaaaactttcactttctttgagattttttcgtcgtcctttcctttttttgttgataaaaaatttcaaagtccattccggctgctaaca |
37592636 |
T |
|
| Q |
510 |
taaattaaaataaaatagctggtatcacgactcaattaaattaagagcga--tcacgcatataaatatgtctaagtagtaaagtagagtgaaccatctac |
607 |
Q |
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| T |
37592637 |
taaattaaaataaaatagctggtatcacgactcaattaaattaagagcgaagtcacgcatataaatatgtctaagtagttaagtagagtgaaccatctac |
37592736 |
T |
|
| Q |
608 |
atttccacgctctcattgattgattttcatagaccaaagataaattaaccccaattaattatagcaatatgaatgcttcatccttaacctcaaacctaag |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
37592737 |
atttccacgctctcattgattgattttcatagaccaaagataaattaa-cccaattaattaga-caatatgaatgcttcatccttaacctcaaacctaag |
37592834 |
T |
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| Q |
708 |
catttcaaattcaaagcaatttcatcaccttagtaaacagctaagaccttctcacgttcactttg |
772 |
Q |
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| T |
37592835 |
catttcaaattcaaagcaatttcatcaccttagtaaacagctaagaccttctcacgttcactttg |
37592899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 37590689 - 37590785
Alignment:
| Q |
131 |
gcaatatacaattttgttccttgcaattaacaaactctcgggctgagtttataaggaggcaaaattaatgtgttaggttggtctaagttagcaatcc |
227 |
Q |
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| T |
37590689 |
gcaatatacaattttgttccttgcaattaacaaactctcgggctgagtttataaggaggcaaaattaatgtgttaggttggtctaagttagcaatcc |
37590785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37590600 - 37590689
Alignment:
| Q |
1 |
tcatgctatgcggtggataagtgatttacaactgccaaatgttgattttgaagttgattcaaagcaagtgactgactacttcaatcgggg |
90 |
Q |
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| T |
37590600 |
tcatgctatgcggtggataagtgatttataactgccaaatgttgattttgaagttgattcaaagcaagtgactgactacttcaatcgggg |
37590689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 37592378 - 37592418
Alignment:
| Q |
240 |
caatcagttaaattgaaaattcaagatatattttcaaatca |
280 |
Q |
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| T |
37592378 |
caatcatttaaattgaaaattcaagatatattttcaaatca |
37592418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30147869 - 30148016
Alignment:
| Q |
1 |
tcatgctatgcggtggataagtgatttacaactgccaaatgttgattttgaagttgattcaaagcaagtgactgactacttcaatcggggggcaatgaag |
100 |
Q |
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| T |
30147869 |
tcatgctatgaggtgggttaatgaattacggcttccaaatgtggattttgaagttgattcgaagcgagtggctgactactttaatc--ggggcaacgaag |
30147966 |
T |
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| Q |
101 |
atatcaccaaatctggagtcgttatggatagcaatatacaattttgttcc |
150 |
Q |
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| T |
30147967 |
atatcaccgaatttggagctattatgaatagcaatatacagttttgttcc |
30148016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 16332697 - 16332841
Alignment:
| Q |
1 |
tcatgctatgcggtggataagtgatttacaactgccaaatgttgattttgaagttgattcaaagcaagtgactgactacttcaatcggggggcaatgaag |
100 |
Q |
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| T |
16332697 |
tcatgctatgcggtgggttaatgaattacagctgccaaatgtggattttgaagttgactcgaagcgagtggctgactactttaatcgagg--caccggag |
16332794 |
T |
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| Q |
101 |
atatcaccaaatctggagtcgttatggatagcaatatacaattttgt |
147 |
Q |
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| T |
16332795 |
atatcaccgaatttggagctattatggacaacaatatacaattttgt |
16332841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 20680933 - 20681080
Alignment:
| Q |
1 |
tcatgctatgcggtggataagtgatttacaactgccaaatgttgattttgaagttgattcaaagcaagtgactgactacttcaatcggggggcaatgaag |
100 |
Q |
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| T |
20680933 |
tcatgctatgcggtgggttaatgaattacggctatcaaatgtggattttgaagttgactcgaagcgagtggctgactactttaatcgaggcgcc--ggag |
20681030 |
T |
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| Q |
101 |
atatcaccaaatctggagtcgttatggatagcaatatacaattttgttcc |
150 |
Q |
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| T |
20681031 |
atatcaccgaatctgaagctattatggatagcaatatacaattttgttcc |
20681080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 14945262 - 14945194
Alignment:
| Q |
1 |
tcatgctatgcggtggataagtgatttacaactgccaaatgttgattttgaagttgattcaaagcaagt |
69 |
Q |
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||||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||| || ||||| |
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| T |
14945262 |
tcatgctattcagtggatacatgatttacgactaccaaatgttgattttgaagttgattcgaaacaagt |
14945194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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