View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12622_low_11 (Length: 491)
Name: NF12622_low_11
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_11 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 49688582 - 49688120
Alignment:
| Q |
18 |
atatccacacaaattacaatgtttcagatgataaatggatcgaagatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49688582 |
atatccacacaaattacaatgtttcagatgataaatggatcgaagatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggct |
49688483 |
T |
|
| Q |
118 |
cccttccagcatttccaccactttatcaattgcttatcggtgtgaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttct |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49688482 |
cccttccagcatttccaccactttatgcattgcttgtcggtgtgaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttct |
49688383 |
T |
|
| Q |
218 |
tcatcattttcatttttaatagacttgagtccaagatcttgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatcca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49688382 |
tcatcattttcatttttaatagacttgagtccaagatcttgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatcca |
49688283 |
T |
|
| Q |
318 |
cttcaactttgatgttctttctttgaccaaccatttcttaaaccatcattccataactgtagacatctgatttatgggacaccccaccaaaattttggga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
49688282 |
cttcaactttgatgttctttctttgaccaaccattt-----accatcattccataactgtagacatctgatttatgggacaccccaccaaaatttcggga |
49688188 |
T |
|
| Q |
418 |
gaacaactctggagcaatatcctggcgttccccttgcaccaaatatggatacaatgctttcttctctc |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
49688187 |
gaacaactctggagcaatatcctggcgttccccttgcaccaaatatggatacaatgctttcttttctc |
49688120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 49683684 - 49683219
Alignment:
| Q |
17 |
aatatccacacaaattacaatgtttcagatgataaatggatcgaagatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggc |
116 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| |||| ||||| | |||||||| |||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
49683684 |
aatatccacacaaattaaagtgtttcagatgataaattgatcaaagatcttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggc |
49683585 |
T |
|
| Q |
117 |
tcccttccagcatttccaccactttatcaattgcttatcggtgtgaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttc |
216 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||| |||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||| || |
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|
| T |
49683584 |
tcccttctagcatttccaccactttattcattgctggtcgatgtgaagggtcggttggtatgcaccataaactcaccattgtcatctttcttaccatctc |
49683485 |
T |
|
| Q |
217 |
ttcatcattttcatttttaatagacttgagtccaagatcttgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatcc |
316 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
49683484 |
ttcatcaatttcatttttaatacacttgagtccaagatcttgattcaattcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatcc |
49683385 |
T |
|
| Q |
317 |
acttcaactttgatgttctttctttgaccaaccatttcttaaaccatcattccataactgtagacatctgatttatgggacaccccaccaaaattttggg |
416 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||| | | |
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|
| T |
49683384 |
acttcaactttgatgttctttcttcgaccaaccatttctaaaaccatcattccataactgtagacatctgatttgtgtgacaccccaccaaaatgtctag |
49683285 |
T |
|
| Q |
417 |
agaacaactctggagca--atatcctggcgttccccttgcaccaaatatggatacaatgctttctt |
480 |
Q |
| |
|
|||||| |||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
49683284 |
agaacagctctggagcaatatatcctggtgtcccccttgcaccaaatattgatacaatgctttctt |
49683219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 49711294 - 49710829
Alignment:
| Q |
17 |
aatatccacacaaattacaatgtttcagatgataaatggatcgaagatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggc |
116 |
Q |
| |
|
|||||||| | |||| ||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| || ||| | |
|
|
| T |
49711294 |
aatatccataaaaatcacaatatttcagatgataaatggattggagatgttgaaggagaagacaaaaagggtttgggtggtatttccagcatttgaagac |
49711195 |
T |
|
| Q |
117 |
tcccttccagcatttccaccactttatcaattgcttatcggtgtgaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||| || ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
49711194 |
tcccttccagcatttccaccactttatgcattgctggtcgatgagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttc |
49711095 |
T |
|
| Q |
217 |
ttcatcattttcatttttaatagacttgagtccaagatcttgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatcc |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
49711094 |
ttcatcattttcatttttaatactcttgagtccaagatcctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatca |
49710995 |
T |
|
| Q |
317 |
acttcaactttgatgttctttctttgaccaaccatttcttaaaccatcattccataactgtagacatctgatttatgggacaccccaccaaaattttggg |
416 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
49710994 |
acttcaaccttaatgttctttcttcgaccaaccatctctaaaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctag |
49710895 |
T |
|
| Q |
417 |
agaacaactctggagca--atatcctggcgttccccttgcaccaaatatggatacaatgctttctt |
480 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49710894 |
agaacaactctggagcaatatatcctggtgttccccttgcaccaaatattgatacaatgctttctt |
49710829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 39 - 480
Target Start/End: Complemental strand, 49714912 - 49714470
Alignment:
| Q |
39 |
tttcagatgataaatggatcgaagatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggctcccttccagcatttccaccac |
138 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
49714912 |
tttcagatgataaatgagctgaagatgttgaaggagacgacaaaaagggtttgggtggtatttccagcacttgaaggctcccttccaacatttccaccac |
49714813 |
T |
|
| Q |
139 |
tttatcaattgcttatcggtgtgaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcattttcatttttaata |
238 |
Q |
| |
|
||||| ||| || ||| || ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49714812 |
tttatgcattcctggtcgatgcgaagggtcagttcgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaata |
49714713 |
T |
|
| Q |
239 |
gacttgagtccaagatcttgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatccacttcaactttgatgttctttc |
338 |
Q |
| |
|
|| | ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||| |
|
|
| T |
49714712 |
cacctcagttcaagatcctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctggaacaatcaacttcaaccttaatgttctttc |
49714613 |
T |
|
| Q |
339 |
tttgaccaaccatttcttaaaccatcattccataactgtagacatctgatttatgggacaccccaccaaaattttgggagaacaactctggagca--ata |
436 |
Q |
| |
|
|| | |||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
49714612 |
ttcggccaaccatttctaaaaccatcattccataactataaacatctgatttatgtgacaccccgtcaaaatttctggagaacaactctggagcaatata |
49714513 |
T |
|
| Q |
437 |
tcctggcgttccccttgcaccaaatatggatacaatgctttctt |
480 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
49714512 |
tcctggtgttcccc-cgcaacaaatatggatacaatgctttctt |
49714470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 49215949 - 49215491
Alignment:
| Q |
17 |
aatatccacacaaattacaatgtttcagatgataaatggatcgaagatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggc |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || ||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
49215949 |
aatatccacacaaattacaacatttcagatgatagattgataggtgatgttgaaggagaagacaaaaagggtttgggtggtatttcaagcacttgaaggc |
49215850 |
T |
|
| Q |
117 |
tcccttccagcatttccaccactttatcaattgcttatcggtgtgaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttc |
216 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||| | |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49215849 |
tcccttccaacatttccaccactttatgcattgctggtcgattcaaagggtctgtttgtatgcaccataaactcaccactgtcatttttcttaccatttc |
49215750 |
T |
|
| Q |
217 |
ttcatcattttcatttttaatagacttgagtccaagatcttgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatcc |
316 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | || ||||| |
|
|
| T |
49215749 |
ttcatcaatttcatttttaatacacctgagtccaagatcctgattcaattcaagacgcttgtaaatccagtgtggaaaatattactc-------caatca |
49215657 |
T |
|
| Q |
317 |
acttcaactttgatgttctttctttgaccaaccatttcttaaaccatcattccataactgtagacatctgatttatgggacaccccaccaaaattttggg |
416 |
Q |
| |
|
|||||||| || |||||||||||| ||| |||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||| | || |
|
|
| T |
49215656 |
acttcaaccttaatgttctttcttcgacaaaccatttctaaaaccatcattccataactataaacatctgatttatgtgacaccccaccaaaatgtctgg |
49215557 |
T |
|
| Q |
417 |
agaacaactctggagca--atatcctggcgttccccttgcaccaaatatggatacaatgctttctt |
480 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| ||||||| |||| |||| ||||||| |
|
|
| T |
49215556 |
agaacaactctggagcaatatatcctggcgttcctcttgcgccaaatacggatgcaatactttctt |
49215491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 248 - 411
Target Start/End: Complemental strand, 49725479 - 49725316
Alignment:
| Q |
248 |
ccaagatcttgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatccacttcaactttgatgttctttctttgaccaa |
347 |
Q |
| |
|
|||||||| ||||| | |||||||| |||||||||||||| |||||||||| || || || | ||||||||| |||||||| ||||| |||| |
|
|
| T |
49725479 |
ccaagatcctgatttgaatcaagacggttgtaaatccaatgaggaaaatatatttcactcgagcggtccacttcagtgttgatgttttttctcctcccaa |
49725380 |
T |
|
| Q |
348 |
ccatttcttaaaccatcattccataactgtagacatctgatttatgggacaccccaccaaaatt |
411 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||||| |
|
|
| T |
49725379 |
ccatttccatgaccatcattccataactgtaaacatctgacttatgtgacactgcaccaaaatt |
49725316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 49728792 - 49728714
Alignment:
| Q |
357 |
aaaccatcattccataactgtagacatctgatttatgggacaccccaccaaaattttgggagaacaactctggagcaat |
435 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||| || || || |||||||||||| ||||||| ||||||||||| |
|
|
| T |
49728792 |
aaaccatcattccataactatatacatcagatttgtgagagacgccaccaaaatttctagagaacacttctggagcaat |
49728714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 49728912 - 49728880
Alignment:
| Q |
265 |
ttcaagacgcttgtaaatccaatgtggaaaata |
297 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
49728912 |
ttcaagacgcttgtaaatccattgtggaaaata |
49728880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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