View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_12 (Length: 491)
Name: NF12622_low_12
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 190 - 420
Target Start/End: Original strand, 42183606 - 42183836
Alignment:
| Q |
190 |
ctgtttcttgaaatttgaacttgttgaagcagtggatggtggtttcaatctgaggctatcaaataggaacaatactgatccagaggctggtaggtgcaaa |
289 |
Q |
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| T |
42183606 |
ctgtttcttgaaatttgaacttgttgaagcagtggatggtggtttcaatttgaggctatcaaataggaacaatactgatccagaggctggtaggtgcaaa |
42183705 |
T |
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| Q |
290 |
agaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagc |
389 |
Q |
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| T |
42183706 |
agaacagatggtaaaaaatggagatgttctaaagatgtagctcttaataacaggtattgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagc |
42183805 |
T |
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| Q |
390 |
ctgtggaacttaacacaaataacaatagcaa |
420 |
Q |
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| T |
42183806 |
ctgtggaacttcacacaaataacaatagcaa |
42183836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 42183390 - 42183574
Alignment:
| Q |
1 |
atcttctttcatgtatggcccttttctctcttcttccttaatttcatattttgatgtacagacaaagaaaatatcatagcccattaactttttctgcttt |
100 |
Q |
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| T |
42183390 |
atcttctttcatgtatggcccttttctctcttcttccttaatttcatattttgatgtacagacaaagaaaataacatagcccattaactttttctacttt |
42183489 |
T |
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| Q |
101 |
tttaagtccattttgagtcaaaagtttgtannnnnnnnnaccacttttcattctatttaccttttgtcattgaatcaatgtgtggc |
186 |
Q |
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| T |
42183490 |
tttaagtccattttgagtcaaaagtttgta-ttttttttaccacttttcattctatttaccttttgtcattgaatcaatgtgtggc |
42183574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 476
Target Start/End: Original strand, 32687254 - 32687308
Alignment:
| Q |
417 |
gcaagtagtaagtgataaataggcttgaagttgttaaactcgttatttgcatgttccaat |
476 |
Q |
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| T |
32687254 |
gcaagtagtaagtgataaataggcttgaagttgt-----tcgttatttgcatgttccaat |
32687308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 397
Target Start/End: Original strand, 11196783 - 11196902
Alignment:
| Q |
278 |
ggtaggtgcaaaagaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtcccc |
377 |
Q |
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| T |
11196783 |
ggtaggtgtagaagaacagatggtaaaaaatggagatgtgctagggatgctcatcctgattctaagtactgtgaccggcatatgattcgacgtcgttacc |
11196882 |
T |
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| Q |
378 |
gttcaagaaagcctgtggaa |
397 |
Q |
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| T |
11196883 |
gttcaagaaagcctgtggaa |
11196902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 7246602 - 7246546
Alignment:
| Q |
343 |
gtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagcctgtggaact |
399 |
Q |
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| T |
7246602 |
gtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
7246546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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