View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_13 (Length: 481)
Name: NF12622_low_13
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 8656583 - 8656137
Alignment:
| Q |
17 |
caaaaagttggtgaaagatttatcactcattcccaccaaacacccaaagagagccttaattttgatagagcatagattaatgataataagagtaaaagta |
116 |
Q |
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| T |
8656583 |
caaaaagttggtgaaagatttatcactcattcccaccaaacacccaaagagagccttaattttgatagagcatagattaatgataataagagtaaaagta |
8656484 |
T |
|
| Q |
117 |
a-ttacttgagagtgcgggcattattctttagaaccaactgttcagcaattgatttactgcggctgtatggatcaacgtgacgatcaattgggaaatacg |
215 |
Q |
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| T |
8656483 |
aattacttgagagtgcgggcattattctttagaaccaactgttcagcaattgatttactgcggctgtatggatcaacgtgacgatcaattgggaaatacg |
8656384 |
T |
|
| Q |
216 |
gcaaagcctcatttccgttaagtatcttttgaccaccaaagacaacattgtatgtgctacaataaacaagccttttgataccaaggtcaatgcaagcgtc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8656383 |
gcaaagcctcatttccgttaagtatcttttgaccaccaaagacaacattgtatgtgctacaataaacaagccttttgataccaaggtcaatgcaagcatc |
8656284 |
T |
|
| Q |
316 |
gagtatatggcatgtcccgtttatattgacttcatcaactcgaccaaattgcagcatctcttttcctgacatcccaaaggcggcaaggtggaatacgcag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8656283 |
gagtatatggcatgtcccgtttatattgacttcatcaactcgaccaaattgcagcatctcttttcctgacatcccaaaggcagcaaggtggaatacgcag |
8656184 |
T |
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| Q |
416 |
tcagcaccacggagtaccctttcaacatcctctttgcgggtaacatc |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8656183 |
tcagcaccacggagtaccctttcaacatcctctttgcgggtaacatc |
8656137 |
T |
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