View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_14 (Length: 471)
Name: NF12622_low_14
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 38568561 - 38568123
Alignment:
| Q |
18 |
agaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaattttagagttgaatgta |
117 |
Q |
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||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38568561 |
agaaacaaacacaggagaagttatagggagaatgtcaggtgatactgttcttattcaagatgccatgggtgagaaggtatgaattttagagttgaatgta |
38568462 |
T |
|
| Q |
118 |
aaatatgattttggagtaaatggttactttgaatctatgaaccacgagcacggacaccaaacacagtacgtcaatactagtagtaatttgaaaaatagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38568461 |
aaatatgattttggagtaaatggttactttgaatctatgaaccacgagcacggacaccaaacacagtacgtcaatactagtagtaatttgaaaaatagaa |
38568362 |
T |
|
| Q |
218 |
taattgaatgtaatcgcatattagtgtcgtttggacaccggacacaaatttaatgtgaagtgtctactacatagctttgaatttatttttctgaatgaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38568361 |
taattgaatgtaatcgcatattagtgtcgtttggacaccggacacaaatttaatgtgaagtgtctactacatagctttgaatttatttttctgaatgaag |
38568262 |
T |
|
| Q |
318 |
gtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttggcggttttgtgatagcatttagcagaggatggcttct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38568261 |
gtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttggcggttttgtgatagcatttaccagaggatggcttct |
38568162 |
T |
|
| Q |
418 |
tactgttgtattgatgtcaacacttccacttcttgttgt |
456 |
Q |
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| T |
38568161 |
tactgttgtattgatgtcaacacttccacttcttgttgt |
38568123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 313 - 456
Target Start/End: Complemental strand, 38527125 - 38526982
Alignment:
| Q |
313 |
tgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttggcggttttgtgatagcatttagcagaggatgg |
412 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||| |
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| T |
38527125 |
tgaaggtttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacatttattgggggttttgtgatagcatttacaaaagggtgg |
38527026 |
T |
|
| Q |
413 |
cttcttactgttgtattgatgtcaacacttccacttcttgttgt |
456 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
38527025 |
cttcttactgttgttatgatgtcaacacttccatttcttgttgt |
38526982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 38527260 - 38527178
Alignment:
| Q |
18 |
agaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38527260 |
agaaacaaacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaa |
38527178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 51198047 - 51198113
Alignment:
| Q |
31 |
ggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
97 |
Q |
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| T |
51198047 |
ggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
51198113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 51144392 - 51144458
Alignment:
| Q |
31 |
ggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
97 |
Q |
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| T |
51144392 |
ggagaggttgttggaagaatgtcaggtgatactgttcttattaaggatgccatgggtgagaaggtat |
51144458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 51211579 - 51211643
Alignment:
| Q |
37 |
gttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaat |
101 |
Q |
| |
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||||| ||||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||| |
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| T |
51211579 |
gttgttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaaggtatgaat |
51211643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 29938556 - 29938485
Alignment:
| Q |
26 |
acacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
97 |
Q |
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|||| ||||| ||||| ||||| ||| | ||||| |||||||||||| ||||||||||||| |||||||||| |
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| T |
29938556 |
acactggagaggttgttggaaggatggcaggtgacactgttcttattaaagatgccatgggggagaaggtat |
29938485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 51155532 - 51155598
Alignment:
| Q |
31 |
ggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
97 |
Q |
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|
||||| ||||| ||||| ||||| |||||||| |||| ||| ||||||||||||| |||||||||| |
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| T |
51155532 |
ggagaggttgttggaaggatgtcaggtgatacatttctaattaaagatgccatgggggagaaggtat |
51155598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 49738595 - 49738535
Alignment:
| Q |
37 |
gttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
97 |
Q |
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||||| |||||||| || ||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
49738595 |
gttgttggaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat |
49738535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 5764220 - 5764298
Alignment:
| Q |
19 |
gaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
97 |
Q |
| |
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|||||| ||||||||||||| | || |||||||||||||| || |||| ||||||||||||||||| || ||||||| |
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| T |
5764220 |
gaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat |
5764298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 5821168 - 5821211
Alignment:
| Q |
43 |
ggaagaatgtctggtgatactgttcttattcaagatgccatggg |
86 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
5821168 |
ggaagaatgtctggtgataccattctcattcaagatgccatggg |
5821211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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