View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_16 (Length: 398)
Name: NF12622_low_16
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 382
Target Start/End: Complemental strand, 42184224 - 42183845
Alignment:
| Q |
3 |
cataggcatagtacatgtttggattcatgataaatttagaagaaccacagattttagcaaaagctatactttgaagcttaagccttcaacaaaatcacat |
102 |
Q |
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| T |
42184224 |
cataggcatagtacatgtttggattcatgataaatttagaagaatcacagattttagcaaaagctatacttagaagcttaagccttcaacaaaatcacat |
42184125 |
T |
|
| Q |
103 |
tggcaacctgatttcatgaaactcatatgatatgaatcaaaacatgtgattctaaacagatatagcaaaagacagatataaactcaccttggttgcttat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42184124 |
tggcaacctgatttcatgaaactcatatgatatgaatcaaaacatgtgattctaaacagatatagcaaaatacagatataaactcaccttggttgcttat |
42184025 |
T |
|
| Q |
203 |
ttgaaccctcaaagctgctattatgcaaagcaagggaagattggagataaggatgaaggggagtagaagcaagaaaatgtgatgaagatccatattttct |
302 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184024 |
ttgaaccctcaaagctgctattatgcaaagaaagggaagattggagataaggatgaaggggagtagaagcaagaaaatgtgatgaagatccatattttct |
42183925 |
T |
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| Q |
303 |
tgtagttggattaggagcagccatagtaaaatcaggcacagaaaaagggttagaatcacaacgagcctttttgatttgat |
382 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183924 |
tgtagttggattaggaacagccacagtaaaatcaggcacagaaaaagggttagaatcacaacgagcctttttgatttgat |
42183845 |
T |
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