View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_2 (Length: 748)
Name: NF12622_low_2
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 327 - 748
Target Start/End: Complemental strand, 49689757 - 49689336
Alignment:
| Q |
327 |
ctaagtgaatgagttaaagtggttaataagctccattaaacaacaaataattctagagaatctaaatttgaaaaaa-ttcttaatcagattacaacgacc |
425 |
Q |
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| T |
49689757 |
ctaagtgaatgagttaaagtggttaataagctccattaaacaacgaataattctagagaatctaaatttgaaaaaaattcttaatcagattacaacgacc |
49689658 |
T |
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| Q |
426 |
ttcttcacataggaactcaggaaccgacaggtnnnnnnnnncgggagtaaatctgatcatcatacaattaaagtgtgtaggagaaaataagaagtgtata |
525 |
Q |
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| T |
49689657 |
ttcttcacataggaactcaggaaccgacaggtaaaaaaaa-cgggattaaatctgatcatcatacaattaaagtgtgtaggagaaaataagaagtgtata |
49689559 |
T |
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| Q |
526 |
gagacgtagatctcaaagctgacagaacaaatggatttaactgaaaaaaccgccaaataaccaacaggtactagcaactcagtggttaagaaagaacttc |
625 |
Q |
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| T |
49689558 |
gaaacatagatctcaaagctgacagaacaaatggatttaactgaaaaaaccgccaaataatcaacaggtactagcaactcagtggttaagaaagaacttc |
49689459 |
T |
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| Q |
626 |
aaaagtatatactagcgttttgcatctttctaaagccaattccaatagttttggatcaaaaccctaaatggttagatgcatgatcatcacagcaccactg |
725 |
Q |
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| T |
49689458 |
aaaagtatatactagcgttttgcatctttctaaagccaattccaatagttttggatcaaaaccctaaatggttagatgcatgatcatcacagcaccactg |
49689359 |
T |
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| Q |
726 |
aacacatacctaacatttgcctc |
748 |
Q |
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| T |
49689358 |
aacacatacctaacatttgcctc |
49689336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 49689916 - 49689843
Alignment:
| Q |
169 |
gaagagaagttagcaatctcgaatttcccacttattcatttaagtgtgaatttctaatcattagtctattcgac |
242 |
Q |
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| T |
49689916 |
gaagagaagttaacaatctcgaatttcccacttattcatttaagtgtaaatttctaatcattagtctattcgac |
49689843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 49690068 - 49690032
Alignment:
| Q |
17 |
agttataactactactaaagctatatgattgtggaaa |
53 |
Q |
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| T |
49690068 |
agttataactactactaaagctatatgattgtggaaa |
49690032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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