View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_24 (Length: 287)
Name: NF12622_low_24
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 2037866 - 2037952
Alignment:
| Q |
190 |
cctgaaaatttgatgtatgagtacgcttatgtgattttgcagaaatattggtcacatctttgagtccaacaacaacagcttgttcat |
276 |
Q |
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| T |
2037866 |
cctgaaaatttgatgtatgagtacgcttatgtgattttgcagaaatgttggtcacatctttgagtccaacaacaacagcttgttcat |
2037952 |
T |
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Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2037671 - 2037753
Alignment:
| Q |
1 |
atctccatacaaaatgattgtttttatagtacaaacaaacatgtactcatgtcatacaaattatttcaattcatactcaattt |
83 |
Q |
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| T |
2037671 |
atctccatacaaaatgattgtttttatagtacaaacaaacatgtactcatgtcctacaaattatttcaattcatactcaattt |
2037753 |
T |
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