View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12622_low_25 (Length: 286)

Name: NF12622_low_25
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12622_low_25
NF12622_low_25
[»] chr8 (4 HSPs)
chr8 (1-268)||(6097720-6097987)
chr8 (20-187)||(6179771-6179938)
chr8 (9-157)||(6047170-6047318)
chr8 (34-187)||(6188545-6188698)
[»] chr5 (1 HSPs)
chr5 (53-149)||(37450196-37450292)
[»] scaffold0570 (1 HSPs)
scaffold0570 (55-95)||(9747-9787)
[»] scaffold0201 (1 HSPs)
scaffold0201 (55-95)||(13553-13593)
[»] chr3 (9 HSPs)
chr3 (55-86)||(23353885-23353916)
chr3 (55-86)||(23406734-23406765)
chr3 (55-86)||(23441865-23441896)
chr3 (55-86)||(23449255-23449286)
chr3 (55-86)||(23465388-23465419)
chr3 (55-86)||(23474397-23474428)
chr3 (55-89)||(23456016-23456050)
chr3 (58-86)||(21088560-21088588)
chr3 (55-95)||(23435444-23435484)
[»] scaffold0005 (1 HSPs)
scaffold0005 (53-95)||(178282-178324)
[»] chr4 (2 HSPs)
chr4 (53-95)||(14638968-14639010)
chr4 (55-95)||(3811984-3812024)
[»] chr2 (1 HSPs)
chr2 (58-104)||(16334755-16334801)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 6097987 - 6097720
Alignment:
Q  1 gttggtccagcacttgttcaagcaatccaagaatcacacatgtctctcgtgattttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcc 100  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6097987 gttggtccagcacttgttcaagcaatccaagaatcacgtatgtctctcgtggttttctcagaaaactatgcttcctcaaaatggtgtttggatgaactcc 6097888  T
Q  101 tcaaaatactcgaatgtagaaaatttcatgatcaagtggttatacctgtgtgctatagaattgatccatcagatgtacgtcatcagacgggaagttacaa 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6097887 tcaaaatactcgaatgtggaaaatttcatgatcaagtggttatacctgtgttctatagaattgatccatcagatgtacgtcatcagacgggaagttacaa 6097788  T
Q  201 ggaaccatttgcaaattatgagatagagcgcaaaagcaatgaagacaaagtgtctcaatggaaagctg 268  Q
    ||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  6097787 ggaaccatttgcaaattaccagatagatcgcaagagcaatgaagacaaagtgtctcaatggaaagctg 6097720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 6179938 - 6179771
Alignment:
Q  20 aagcaatccaagaatcacacatgtctctcgtgattttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaaaatactcgaatgtag 119  Q
    ||||||||||||| ||||| |||||||| ||  |||||||||||||||||||  ||||||| ||||| || |||||||||||| | |||||  |||| ||    
T  6179938 aagcaatccaagattcacatatgtctcttgtagttttctcagaaaactatgcaacctcaaagtggtgcttggatgaactcctccatatactacaatgcag 6179839  T
Q  120 aaaatttcatgatcaagtggttatacctgtgtgctatagaattgatccatcagatgtacgtcatcaga 187  Q
    ||||  ||||| ||| || || |||||||||| |||||  || ||||| ||| |||| ||||||||||    
T  6179838 aaaacatcatggtcaggtagtaatacctgtgttctataacatagatccttcacatgttcgtcatcaga 6179771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 6047318 - 6047170
Alignment:
Q  9 agcacttgttcaagcaatccaagaatcacacatgtctctcgtgattttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaaaata 108  Q
    |||||||| | ||||||||||||| |||| ||| ||||| ||  | |||||  |||| |||||  ||||||| ||||| ||  |||||||||||||||||    
T  6047318 agcacttgctgaagcaatccaagactcacgcatatctcttgttgtattctccaaaaattatgcaacctcaaagtggtgcttgaatgaactcctcaaaata 6047219  T
Q  109 ctcgaatgtagaaaatttcatgatcaagtggttatacctgtgtgctata 157  Q
    || ||||| | |||| |||||| |||||| ||||||||||||| |||||    
T  6047218 cttgaatgcaaaaaacttcatggtcaagttgttatacctgtgttctata 6047170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 6188698 - 6188545
Alignment:
Q  34 tcacacatgtctctcgtgattttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaaaatactcgaatgtagaaaatttcatgatc 133  Q
    ||||| |||||||| ||  |||||||| || |||||||  | ||||| ||||| || ||||||||| || | |||||  |||| |||||| || |||  |    
T  6188698 tcacatatgtctcttgtagttttctcaaaagactatgcaacttcaaagtggtgcttggatgaactcgtccacatacttcaatgcagaaaacttaatggac 6188599  T
Q  134 aagtggttatacctgtgtgctatagaattgatccatcagatgtacgtcatcaga 187  Q
    | || ||||||||||||| |||||  || ||||||||| |||||||||||||||    
T  6188598 atgtagttatacctgtgttctataacatagatccatcacatgtacgtcatcaga 6188545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 37450196 - 37450292
Alignment:
Q  53 ttttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaaaatactcgaatgtagaaaatttcatgatcaagtggttatacctgt 149  Q
    ||||||| ||||| | |||| | |||||||||||||| || |||||| ||||| | |||||||||||||||  ||||| |||| | |||||||||||    
T  37450196 ttttctctgaaaattttgctacatcaaaatggtgtttggaagaactcgtcaaagtgctcgaatgtagaaaagatcatggtcaaattgttatacctgt 37450292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 9747 - 9787
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtgtttagatga 95  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  9747 ttctcagaaaactatgcttcctcaaaatggtgcttaaatga 9787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 13593 - 13553
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtgtttagatga 95  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  13593 ttctcagaaaactatgcttcctcaaaatggtgcttaaatga 13553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 23353916 - 23353885
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtg 86  Q
    ||||||||||||||||||||||||||||||||    
T  23353916 ttctcagaaaactatgcttcctcaaaatggtg 23353885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 23406765 - 23406734
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtg 86  Q
    ||||||||||||||||||||||||||||||||    
T  23406765 ttctcagaaaactatgcttcctcaaaatggtg 23406734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 23441896 - 23441865
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtg 86  Q
    ||||||||||||||||||||||||||||||||    
T  23441896 ttctcagaaaactatgcttcctcaaaatggtg 23441865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 23449286 - 23449255
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtg 86  Q
    ||||||||||||||||||||||||||||||||    
T  23449286 ttctcagaaaactatgcttcctcaaaatggtg 23449255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 23465419 - 23465388
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtg 86  Q
    ||||||||||||||||||||||||||||||||    
T  23465419 ttctcagaaaactatgcttcctcaaaatggtg 23465388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 23474428 - 23474397
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtg 86  Q
    ||||||||||||||||||||||||||||||||    
T  23474428 ttctcagaaaactatgcttcctcaaaatggtg 23474397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 23456050 - 23456016
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtgttt 89  Q
    |||||||||||||| ||||||||||||||||||||    
T  23456050 ttctcagaaaactacgcttcctcaaaatggtgttt 23456016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 21088588 - 21088560
Alignment:
Q  58 tcagaaaactatgcttcctcaaaatggtg 86  Q
    |||||||||||||||||||||||||||||    
T  21088588 tcagaaaactatgcttcctcaaaatggtg 21088560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 23435484 - 23435444
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtgtttagatga 95  Q
    |||||||||||||||||||| ||||||||||| ||| ||||    
T  23435484 ttctcagaaaactatgcttcttcaaaatggtgcttaaatga 23435444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 178282 - 178324
Alignment:
Q  53 ttttctcagaaaactatgcttcctcaaaatggtgtttagatga 95  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||    
T  178282 ttttctcagaaaactatgcatcctcaacatggtgcttagatga 178324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 14639010 - 14638968
Alignment:
Q  53 ttttctcagaaaactatgcttcctcaaaatggtgtttagatga 95  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||    
T  14639010 ttttctcagaaaactatgcatcctcaacatggtgcttagatga 14638968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 3812024 - 3811984
Alignment:
Q  55 ttctcagaaaactatgcttcctcaaaatggtgtttagatga 95  Q
    |||||||||||||||||||| ||| | ||||||||||||||    
T  3812024 ttctcagaaaactatgcttcttcacattggtgtttagatga 3811984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 16334755 - 16334801
Alignment:
Q  58 tcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaa 104  Q
    ||||||||||||||||| ||||||||||||||  |||||||| ||||    
T  16334755 tcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaa 16334801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University