View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12622_low_26 (Length: 277)

Name: NF12622_low_26
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12622_low_26
NF12622_low_26
[»] chr3 (8 HSPs)
chr3 (19-272)||(27040970-27041223)
chr3 (19-263)||(27085416-27085660)
chr3 (46-263)||(27062263-27062480)
chr3 (46-215)||(27056268-27056438)
chr3 (46-263)||(27069330-27069547)
chr3 (173-263)||(27079619-27079709)
chr3 (129-272)||(27045309-27045452)
chr3 (198-256)||(27098062-27098120)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 27041223 - 27040970
Alignment:
Q  19 attatgttacaaactcaataaactctttggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27041223 attatgttacaaactcaataaactctttggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaa 27041124  T
Q  119 ttttgaagtctatgaattagtgaattttgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgat 218  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||||| ||||||  |||||||||||||||||||||    
T  27041123 ttttgaaggctatgaattagtgaattttttaactgcaccatgcaagatgcttggcaccctcgatacgtgtattttctcatctcctaataaacttgatgat 27041024  T
Q  219 gatgatccatcaatggaaggaggagttaggatatttacatcactctctgctgct 272  Q
     |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  27041023 catgatctatcaatggaaggaggagttaggatatttacatcactccctgttgct 27040970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 27085660 - 27085416
Alignment:
Q  19 attatgttacaaactcaataaactctttggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27085660 attatgttacaaactcaataaactctttggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaa 27085561  T
Q  119 ttttgaagtctatgaattagtgaattttgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgat 218  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||||| ||||||  |||||||||||||||||||||    
T  27085560 ttttgaaggctatgaattagtgaattttttaactgcaccatgcaagatgcttggcaccctcgatacgtgtattttctcatctcctaataaacttgatgat 27085461  T
Q  219 gatgatccatcaatggaaggaggagttaggatatttacatcactc 263  Q
     ||||||  ||||||||||||||||||||||||||||||||||||    
T  27085460 catgatctgtcaatggaaggaggagttaggatatttacatcactc 27085416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 46 - 263
Target Start/End: Complemental strand, 27062480 - 27062263
Alignment:
Q  46 tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattt 145  Q
    |||||||||||||||||||||||||||||  |||||  |||| |||||||||||||||||||||||||||| |||||| ||  |||||||||||||||||    
T  27062480 tggaattggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcaggaaaatttagattttggaggttatgaattagtgaattt 27062381  T
Q  146 tgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagtt 245  Q
    | ||||||||||||||||||||||||||||| ||||| | ||  ||||||  ||  ||||||||||||||||| |||||||||||||||| |||||||||    
T  27062380 tctacctgcaccatgcaagatgcttgccaccgtcgatgcatgcattttctcatcagctaataaacttgatgatcatgatccatcaatggatggaggagtt 27062281  T
Q  246 aggatatttacatcactc 263  Q
    ||||||||||| ||||||    
T  27062280 aggatatttacttcactc 27062263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 27056438 - 27056268
Alignment:
Q  46 tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattt 145  Q
    |||||||||||| ||||||||||||||||  |||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  27056438 tggaattggaagatagtggtgcagtaacggttcta-gtgaattgaaacatttggattttcaggaaaatttaaattttgaaggctatgaattagtgaattt 27056340  T
Q  146 tgtacc--tgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgat 215  Q
    | ||||  || |||||||| ||||||||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  27056339 tttacctgtgtaccatgcatgatgcttgccaccctcgatacgtgtattttctcatctcctaataaacttgat 27056268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 263
Target Start/End: Complemental strand, 27069547 - 27069330
Alignment:
Q  46 tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattt 145  Q
    ||||||||||||| ||||||||||||||   | | |  |||| ||| |||||||||||||| |||||| || |||||| || ||||||| | ||||||||    
T  27069547 tggaattggaagcaagtggtgcagtaacagttttgacagagtggaagcatttgggttttcatgaaaatatagattttggaggctatgaagttgtgaattt 27069448  T
Q  146 tgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagtt 245  Q
     ||||| ||||| |||||||||||||| ||| | ||| ||||  ||||||  ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  27069447 agtaccagcaccgtgcaagatgcttgctaccgttgatgcgtgcattttctcgtctcctaataaacttgatgatcatgatccatcaatggatggaggagtt 27069348  T
Q  246 aggatatttacatcactc 263  Q
    ||||| || |||||||||    
T  27069347 aggattttcacatcactc 27069330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 27079709 - 27079619
Alignment:
Q  173 caccatcgatacgtgttttttcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactc 263  Q
    |||| ||||||||||| ||||||  ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  27079709 caccctcgatacgtgtattttctcatctcctaataaacttgatgatcatgatctgtcaatggaaggaggagttaggatatttacatcactc 27079619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 272
Target Start/End: Complemental strand, 27045452 - 27045309
Alignment:
Q  129 tatgaattagtgaattttgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgatgatgatccat 228  Q
    ||||||| ||||||||||||||| ||||||||||| ||| ||||  |  | ||   |||  |||||   ||||||  |||||||||||||||||||||||    
T  27045452 tatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttggaagggtgcattttcgcatctcctggtaaacttgatgatgatgatccat 27045353  T
Q  229 caatggaaggaggagttaggatatttacatcactctctgctgct 272  Q
    ||||| |||||||||||| ||| |||||||||||| ||| ||||    
T  27045352 caatgaaaggaggagttaagatttttacatcactccctgttgct 27045309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 27098120 - 27098062
Alignment:
Q  198 tctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttac 256  Q
    |||||||||||| ||||  ||||||||||||||||| ||||||| |||| ||| |||||    
T  27098120 tctcctaataaatttgacaatgatgatccatcaatgaaaggaggggttaagatttttac 27098062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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