View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_28 (Length: 272)
Name: NF12622_low_28
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 43873567 - 43873326
Alignment:
| Q |
20 |
actggtatctgctttgattttttgtttggtgtgcgagatattgtctctaaattattattgaagatgttgactgaaggatttcctttcttttttattgatg |
119 |
Q |
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| T |
43873567 |
actggtatctgctttgattttttgtttggtgtgcgagatattgtctctaaattattattgaagatgttgactgaaggatttcctttcttttttattgatg |
43873468 |
T |
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| Q |
120 |
atttacttgtatggttaattgacaatgctcgtctattcacctgtgttacaaccaaattgctcttaaacacattttagtatcaaatattgttcagaactat |
219 |
Q |
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| T |
43873467 |
atttacttgtatggttaattgacaatgctcgtctattcacctgtgttactaccaaattgctcttaaacacattttagtatcaaatattgttcagaactat |
43873368 |
T |
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| Q |
220 |
tcatgtgctattttcaaatggcacgagttactcgacattcat |
261 |
Q |
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| T |
43873367 |
tcatgtgctattttcaaatggcacgagttactcgacattcat |
43873326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 8346914 - 8347023
Alignment:
| Q |
22 |
tggtatctgctttgattttttgtttggtgtgcgagatattgtctctaaattattattgaagatgttgactgaaggatttcctttcttttttattgatgat |
121 |
Q |
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| T |
8346914 |
tggtatctgctttggttttctgtttggtgtgcgagatattgtctctaa---attattgaagatgctgactgttggattagctttcttttttcttaatgat |
8347010 |
T |
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| Q |
122 |
ttacttgtatggt |
134 |
Q |
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| T |
8347011 |
ttacttgtctggt |
8347023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 5358898 - 5358790
Alignment:
| Q |
22 |
tggtatctgctttgattttttgtttggtgtgcgagatattgtctctaaattattattgaagatgttgactgaaggatttcctttcttttttattgatgat |
121 |
Q |
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| T |
5358898 |
tggtatctgctttgattttctgtttggtgtgtgagatatagtctttaa---attgttgaagatgttg-ctgaatgattagctttctttgttcttgatgat |
5358803 |
T |
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| Q |
122 |
ttacttgtatggt |
134 |
Q |
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|||||||| |||| |
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| T |
5358802 |
ttacttgtctggt |
5358790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 742964 - 742879
Alignment:
| Q |
37 |
ttttttgtttggtgtgcgagatattgtctctaaattattattgaagatgttgactgaaggatttcctttcttttttattgatgatttac |
125 |
Q |
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|||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||||||||| || ||| ||||| |
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| T |
742964 |
ttttctgtttggtgtgcgagatattgtctccaa---attattgaagatgttgagtgaaggattgactttcttttttcttaatggtttac |
742879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 7436530 - 7436482
Alignment:
| Q |
27 |
tctgctttgattttttgtttggtgtgcgagatattgtctctaaattatt |
75 |
Q |
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| T |
7436530 |
tctgctttggttttctgtttggtgtgcaagatattgtctctaaattatt |
7436482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 1205769 - 1205833
Alignment:
| Q |
73 |
attattgaagatgttgactgaaggatttcctttcttttttattgatgatttacttgtatggttaa |
137 |
Q |
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| T |
1205769 |
attattggagatattgtctgaaggattaaatttcttatttattgatgatttatttgtctggttaa |
1205833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 4696497 - 4696449
Alignment:
| Q |
27 |
tctgctttgattttttgtttggtgtgcgagatattgtctctaaattatt |
75 |
Q |
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||||||||| |||| |||||||||||| ||||||||||||||||||||| |
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| T |
4696497 |
tctgctttggttttctgtttggtgtgcaagatattgtctctaaattatt |
4696449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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