View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12622_low_3 (Length: 723)
Name: NF12622_low_3
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 677; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 715
Target Start/End: Original strand, 9821682 - 9822399
Alignment:
| Q |
1 |
ttcatctttctccatttttcgtaatttccttttcttctcctgtatcacccgcggatacgattcctccgcgattcccgtccccgacttgccggagagctcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821682 |
ttcatctttctccatttt-cgtaatttccttttcttctcctgtatcacccgcggatacgattcctccgcgattcccgtccccgacttgccggagagctcc |
9821780 |
T |
|
| Q |
101 |
attctccgtacggcgctaaactgacgcgactgaggattctagcttcgcacattgcattcaaattttgaaaattgcggttttacgtataactctatatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9821781 |
attctccgtacggcgctaaactgacgcgactgaggattctagcttcgcacattgcattcaaattttgaaaattgcggttttacgtataactctatatatg |
9821880 |
T |
|
| Q |
201 |
tgtatcttaatttaggggttttgaatgttcaggatttttgtctcttaaattgaattttggattttatatgaatggtttacctagttgtaa---ttttatt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
9821881 |
tgtatcttaatttaggggttttgaatgttcaggatttttgtctcttaaattgaattttggattttctatgaatggtttacctagttgtaatttttttatt |
9821980 |
T |
|
| Q |
298 |
gattgatttttcaaattaaacattgtataagttcttcggcttgttgttgcatttggattcaattcatagaggattgttcataatgcattgtttgtattct |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9821981 |
gattgatttttcaaattaaacattgtataagttcttcggcttgttgttgcatttggattcaattcatagaggattgttcataatgcattgtttgtattct |
9822080 |
T |
|
| Q |
398 |
tgacaagtcatgggtctaaattgcgatcactttactctgtgaatcatgatattgcggtcatggttactccttgaatcatgatattgt-gcaaattgtggc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
9822081 |
tgacaagtcatgggtctaaattgcgatcactttactctgtgaatcatgatattgcggtcatggttactccttgaatcatgatattgtggcaaattgtggc |
9822180 |
T |
|
| Q |
497 |
cgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaatattgctgttgctgattgcaatttagaaccattgcctgaatgttgaatat |
596 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9822181 |
cgatgagaccgaagctgcaatgctattgagtagatatctaaaacttttaatattgctgttgctgattgcaatttagaaccattgcctgaatgttgaatat |
9822280 |
T |
|
| Q |
597 |
aaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattcattttttcaaattttaacatgtcagcgt |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
9822281 |
aaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattcattttttcaaattttaacatgtcagtgt |
9822380 |
T |
|
| Q |
697 |
cgggcctggtgtctgtgct |
715 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
9822381 |
cgggcctggtgtctgtgct |
9822399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 715
Target Start/End: Complemental strand, 6275807 - 6275091
Alignment:
| Q |
1 |
ttcatctttctccatttttcgtaatttccttttcttctcctgtatcacccgcggatacgattcctccgcgattcccgtccccgacttgccggagagctcc |
100 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6275807 |
ttcatttttctccatttttcataatttccttttcttctcctgtatcacccgcggatacgattcctccgcgattcccgtccccgacttgccggagagttcc |
6275708 |
T |
|
| Q |
101 |
attctccgtacggcgctaaactgacgcgactgaggattctagcttcgcacattgcatt-caaattttgaaaattgcggttttacgtataactctatatat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6275707 |
attctccgtacggcgctaaactgacgcgattgaggattctagcttcgcacattgcattgcaaattttgaaaattgcggttttacgtataactctatatat |
6275608 |
T |
|
| Q |
200 |
--gtgtatcttaatttaggggttttgaatgttcaggatttttgtctcttaaattgaattttggattttatatgaatggtttacctagttgtaattttatt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6275607 |
atgtgtatcttaatttaggggttttgaatgttcaggatttttgtctcttaaattgatttttggattttctatgaatggtttacctagttgtaattttatt |
6275508 |
T |
|
| Q |
298 |
gattgatttttcaaattaaacattgtataagttcttcggcttgttgttg---catttggattcaattcatagaggattgttcataatgcattgtttgtat |
394 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
6275507 |
gattgatttttcgaattaaacattgtataagttcttcggcttgttgttggtgcatttggattcaattcatagaggattgttcatgatgcactgtttgtat |
6275408 |
T |
|
| Q |
395 |
tcttgacaagtcatgggtctaaattgcgatcact-ttactctgtgaatcatgatattgcggtcatggttactccttgaatcatgatattgtg-caaattg |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6275407 |
tcttgacaagtcatgggtctaaattgcgatcacggttactctgtgaatcatgatattgcggtcatggttactccttgaatcatgatattgtggcaaattg |
6275308 |
T |
|
| Q |
493 |
tggccgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaatattgctgttgctgattgcaatttagaaccattgcctgaatgttga |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275307 |
tggccgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaatattgctgttgctgattgcaatttagaaccattgcctgaatgttga |
6275208 |
T |
|
| Q |
593 |
atataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattcattttttcaaattttaacatgtca |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275207 |
atataaatcactgtaacaccgacacttcagatggaactggcaggacatgg------gtgatacattcgattaattcattttttcaaattttaacatgtca |
6275114 |
T |
|
| Q |
693 |
gcgtcgggcctggtgtctgtgct |
715 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
6275113 |
gtgtcgggcctggtgtctgtgct |
6275091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 569 - 686
Target Start/End: Original strand, 9822890 - 9823007
Alignment:
| Q |
569 |
ttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
668 |
Q |
| |
|
|||||| |||||| ||||| ||||||| ||| || |||| |||||||||||| ||||||| ||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
9822890 |
ttagaatcattgcttgaatattgaatagaaaccattgtagcaccgacacttctaatggaaccggcaggacacagccatatgtgatacattcaattaattc |
9822989 |
T |
|
| Q |
669 |
attttttcaaattttaac |
686 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
9822990 |
attttttcaagttttaac |
9823007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 569 - 686
Target Start/End: Complemental strand, 6273963 - 6273846
Alignment:
| Q |
569 |
ttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
668 |
Q |
| |
|
|||||| ||| || ||||| ||||||| ||| || | || |||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
6273963 |
ttagaatcatcgcttgaatattgaatagaaaccattttagcaccgacacttctaatggaaccggcaggacacaaccatatgtgatacattcaattaattc |
6273864 |
T |
|
| Q |
669 |
attttttcaaattttaac |
686 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
6273863 |
attttttcaagttttaac |
6273846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 686
Target Start/End: Complemental strand, 6274605 - 6274488
Alignment:
| Q |
569 |
ttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
668 |
Q |
| |
|
|||||| ||| || ||||| ||||||| ||| || | || |||||||||||| ||||||| ||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
6274605 |
ttagaatcatcgcttgaatattgaatagaaaccattatagcaccgacacttctaatggaaccggcaggacacaaccatatgcgatacattcaattaattc |
6274506 |
T |
|
| Q |
669 |
attttttcaaattttaac |
686 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
6274505 |
attttttcaagttttaac |
6274488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 8e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 41 - 343
Target Start/End: Original strand, 35678772 - 35679074
Alignment:
| Q |
41 |
tgtatcacccgcggatacgattcctccgcgattcccgtccccgacttgccggagagctccattctccgtacggcgctaaactgacgcgactgaggattct |
140 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||| |
|
|
| T |
35678772 |
tgtatcactcgcggatacgattcctccgcgatttccggccgcgacttgccggagagctccattctccataccgcgctaaactgacgcgattgtggattct |
35678871 |
T |
|
| Q |
141 |
agcttcgcacattgcatt-caaattttgaaaattgcggttttacgtataactctatatatgtgtatcttaatttaggggttttgaatgttcaggattttt |
239 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || |||||| ||||||||||||| ||| ||| ||||||||||| ||||||| || ||||||||| |
|
|
| T |
35678872 |
agcttcgcacattgcattgcaaattttgaaaattacgcttttacatataactctatatgtgtatattttaatttagggtttttgaaattttaggattttt |
35678971 |
T |
|
| Q |
240 |
gtctcttaaattgaattttggattttatatgaatggtttacctagttgtaattttattgattgatttttcaaattaaacattgtataagttcttcggctt |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || |||| ||||||||||||||| |||| |
|
|
| T |
35678972 |
gtctcttaaattgaattttggattttctatgaatggtttacctagttatacttttattgattgattttctaagttaatg-ttgtataagttcttcagctt |
35679070 |
T |
|
| Q |
340 |
gttg |
343 |
Q |
| |
|
|||| |
|
|
| T |
35679071 |
gttg |
35679074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 448 - 619
Target Start/End: Original strand, 35679113 - 35679287
Alignment:
| Q |
448 |
attgcggtcatggttactccttgaatcatgatattgtg-caaattgtggccgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaa |
546 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||| | ||||||||||| |||||||| | || | |||||| ||||||||||||||||||| |||| |
|
|
| T |
35679113 |
attgcggtcacggttaccctttgaatcatgatattgcggcaaattgtggcagatgagactgtagttacaatgccgttgagtagatatctaaaaaattta- |
35679211 |
T |
|
| Q |
547 |
tattgctgttgctgattgcaatttagaaccattgcctgaa---tgttgaatataaatcactgtaacaccgacactt |
619 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || |||| ||||||||| |||||||| || ||||||||||| |
|
|
| T |
35679212 |
tattgctgttgttgattgcaatttagaaccatagcttgaatgttgttgaatagaaatcactatagcaccgacactt |
35679287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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