View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_30 (Length: 266)
Name: NF12622_low_30
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 43873317 - 43873061
Alignment:
| Q |
1 |
catcactatttctaaccgttctacctttatggttcttactccccgattaatatcgagtccttttcaatgcttttgaggaatatgatggcagtaaggggaa |
100 |
Q |
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| T |
43873317 |
catcactatttctaaccgttctacctttatggttcttactccccgattaatatcgagtccttttcaaggcttttgaggaatatgatggcggtaaggggaa |
43873218 |
T |
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| Q |
101 |
gtgattataagcttaagactgtctatttttgcttaataattggaagacttagaatagtgtttgggtcctatatgaaacccttactatnnnnnnnnnctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43873217 |
gtgattataagcttaagactgtctatttttgcttaatgattggaagacttagaatagtgtttgggtcctatatgaaacccttactat-aaaaaaaactgt |
43873119 |
T |
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| Q |
201 |
gttttattgattgctggcaatttggtacttagttccaccttcgatccttctctgtgct |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43873118 |
gttttattgattgctggcaatttggtacttagttccaccttcgatccttctttgtgct |
43873061 |
T |
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