View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_33 (Length: 250)
Name: NF12622_low_33
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 4803301 - 4803539
Alignment:
| Q |
8 |
tagcaaaggactgtttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctccttaagaat |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4803301 |
tagcaaaggactatttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctccttaagaat |
4803400 |
T |
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| Q |
108 |
cccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggctccttggatatcatcatacacatgcaaaaattagtat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4803401 |
cccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggctccttggatatcatcatacacatgcaaaaattagtat |
4803500 |
T |
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| Q |
208 |
actagaattacaagaggtcaattactactagaatattta |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4803501 |
actagaattacaagaggtcaattactactagaatattta |
4803539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 47416341 - 47416121
Alignment:
| Q |
8 |
tagcaaaggactgtttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctccttaagaat |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47416341 |
tagcaaaggactgtttccagcttgacacaataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctgcttaagaat |
47416242 |
T |
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| Q |
108 |
cccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggctccttggatatcatcatacacatgcaaaaattagtat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47416241 |
cccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggcttcttggatatcatcatacacatgcaaaaattagtat |
47416142 |
T |
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| Q |
208 |
actagaattacaagaggtcaa |
228 |
Q |
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||||||||||||||||||||| |
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| T |
47416141 |
actagaattacaagaggtcaa |
47416121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 23832655 - 23832724
Alignment:
| Q |
177 |
gatatcatcatacacatgcaaaaattagtatactagaattacaagaggtcaattactactagaatattta |
246 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23832655 |
gatatcatcatacacatgcaaaatttagtatactagaattacaagaggtcaattactactagaatattta |
23832724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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