View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_35 (Length: 246)
Name: NF12622_low_35
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_35 |
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| [»] chr7 (6 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 4803768 - 4803546
Alignment:
| Q |
24 |
aattatgtccgcatagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaagattttttctagctccaact |
123 |
Q |
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| T |
4803768 |
aattatgtccgcatagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaagattttttctagctccaact |
4803669 |
T |
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| Q |
124 |
catgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagta |
223 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4803668 |
catgagaaagttgaaagtgtaggagcattatcatgcaccaaaccagttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagta |
4803569 |
T |
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| Q |
224 |
gtaattggccaatggatcaaaat |
246 |
Q |
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||||||||||||||||||||||| |
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| T |
4803568 |
gtaattggccaatggatcaaaat |
4803546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 37465354 - 37465274
Alignment:
| Q |
114 |
agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctg |
194 |
Q |
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| T |
37465354 |
agctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactaatgttgctatgcttcctg |
37465274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 6776848 - 6776928
Alignment:
| Q |
114 |
agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctg |
194 |
Q |
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| T |
6776848 |
agctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactattgttgctatgcttcctg |
6776928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 37582510 - 37582588
Alignment:
| Q |
114 |
agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcc |
192 |
Q |
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||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
37582510 |
agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatgcttcc |
37582588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 37588805 - 37588883
Alignment:
| Q |
114 |
agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcc |
192 |
Q |
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| T |
37588805 |
agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttcc |
37588883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 49022183 - 49022130
Alignment:
| Q |
138 |
aagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttc |
191 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49022183 |
aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttc |
49022130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 23832874 - 23832788
Alignment:
| Q |
160 |
accaaaccagttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaat |
246 |
Q |
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| T |
23832874 |
accaaaccggttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaat |
23832788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 30534049 - 30534116
Alignment:
| Q |
36 |
atagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaa |
103 |
Q |
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||||||||| |||||| ||||| || |||||||| |||||||||| ||| | | |||||||||||||| |
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| T |
30534049 |
atagctctgcaatttgattatgtttatttagcttgtgcaagttctattaggtattaggatcattaaaa |
30534116 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 37505271 - 37505322
Alignment:
| Q |
195 |
taggttatttaacttcatctggtttagtagtaattggccaatggatcaaaat |
246 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37505271 |
tagggtatttaacttcacctggtttagtagtaattggccaatggatcaaaat |
37505322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 37426059 - 37426112
Alignment:
| Q |
138 |
aagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttc |
191 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37426059 |
aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttc |
37426112 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 38571294 - 38571346
Alignment:
| Q |
59 |
ttttttagcttttgcaagttctgttaagaactaggatcattaaaagatttttt |
111 |
Q |
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||||||||||| ||||||||| |||| || |||||||||||||||||||||| |
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| T |
38571294 |
ttttttagcttgtgcaagttcggttagtaattaggatcattaaaagatttttt |
38571346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 44857196 - 44857139
Alignment:
| Q |
46 |
aatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaa |
103 |
Q |
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|||||| ||||| || |||||||| ||||||||| |||| ||| |||||||||||||| |
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| T |
44857196 |
aatttgattatgtttatttagcttgtgcaagttcggttaggaattaggatcattaaaa |
44857139 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 29893954 - 29893902
Alignment:
| Q |
59 |
ttttttagcttttgcaagttctgttaagaactaggatcattaaaagatttttt |
111 |
Q |
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||||||| ||| ||||||||| |||| || |||||||||||||||||||||| |
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| T |
29893954 |
ttttttaacttgtgcaagttcggttagtaattaggatcattaaaagatttttt |
29893902 |
T |
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