View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12622_low_38 (Length: 223)

Name: NF12622_low_38
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12622_low_38
NF12622_low_38
[»] chr8 (4 HSPs)
chr8 (15-110)||(18170887-18170982)
chr8 (15-110)||(18634455-18634550)
chr8 (175-206)||(18171028-18171059)
chr8 (175-206)||(18634596-18634627)
[»] chr2 (1 HSPs)
chr2 (25-110)||(6387561-6387646)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 18170887 - 18170982
Alignment:
Q  15 cacagaaccgatccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18170887 cacagaaccaatccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 18170982  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 18634455 - 18634550
Alignment:
Q  15 cacagaaccgatccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18634455 cacagaaccaatccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 18634550  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Original strand, 18171028 - 18171059
Alignment:
Q  175 gattcttcgaataggattacctccgttagaag 206  Q
    ||||||||||||||||||||||||||||||||    
T  18171028 gattcttcgaataggattacctccgttagaag 18171059  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Original strand, 18634596 - 18634627
Alignment:
Q  175 gattcttcgaataggattacctccgttagaag 206  Q
    ||||||||||||||||||||||||||||||||    
T  18634596 gattcttcgaataggattacctccgttagaag 18634627  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 6387561 - 6387646
Alignment:
Q  25 atccatgtcctttttgaatcatggtacctatctgcaagtaaatagttaaagcatccagcacagtgtactgcaaacaaggtcacctg 110  Q
    ||||| || ||||| |||||| ||||| ||||||||| || ||||||||||||||| |||||||| |||||||||||||| |||||    
T  6387561 atccaagttcttttggaatcagggtacatatctgcaattagatagttaaagcatcctgcacagtgcactgcaaacaaggttacctg 6387646  T

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