View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12622_low_4 (Length: 703)
Name: NF12622_low_4
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 39689209 - 39689697
Alignment:
| Q |
1 |
aacaaagggcatgttccagtgctagtagggaaaaaggaag------aagaagaagatatggagaggatttgggtgagcatcaaagtgattcaccatccca |
94 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39689209 |
aacaaagggcatgttccagtgctagtaggcaaaaaggaagaagaagaagaagaagatatggagaggatttgggtgagcatcaaagtgattcaccatccca |
39689308 |
T |
|
| Q |
95 |
aaattgttgaattgttggaacaatctgctaaagaatatggataccaacaaggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattcttgc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39689309 |
aaattgttgaattgttggaacaatctgctaaagaatatggataccaacagggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattcttgc |
39689408 |
T |
|
| Q |
195 |
taacatatcttgcacttcacgggttgctttgtctaattaattgtctttgttattagtattaaactcaatgtaacattattattttcattcaaatcccctt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39689409 |
taacatatcttgcacttcacgggttgctttgtctaattaattgtctttgttattagtattaaactcaatgtaacattattattttcattcaaatcccctt |
39689508 |
T |
|
| Q |
295 |
tttattcaccaaactctctgtaataatatatagtctatc--tttagtcttaataactattactttttgtctctcaaataaattttcgtcagctttcgacc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39689509 |
tttattcaccaaactctctgtaataatatatagtctatctttttagtcttaataactattactttttgtctctcaaataaattttcgtcagctttcgacc |
39689608 |
T |
|
| Q |
393 |
tctannnnnnnggggtatgtagaatggaatatgtgttttggttagacataatttaacatgttaatagtctcgtgactttggtcggtaga |
481 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39689609 |
tctatttttttggggtatgtagaatggaatatgtgttttggttagacataatttaacatgttaatagtctcgtgactttggtcagtaga |
39689697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 476 - 626
Target Start/End: Original strand, 39690884 - 39691036
Alignment:
| Q |
476 |
ggtagatatactgcctgcgatatgcagagtttgagttttgaatcctcaattttttatgtattcattttaaaggatgaatt-ctaatcaatataccacttg |
574 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39690884 |
ggtagaaatactgcctgcgatatgcagagtt-gagttttgaatcctgaattttctatgtatttattttaaaggatgaatttctaatcaatataccacttg |
39690982 |
T |
|
| Q |
575 |
aactaaagaaaatgtaacatattaattaaa--atgtgtcgttttagtaataaaa |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
39690983 |
aactaaagaaaatgtaacatattaattaaaatatgtgtcgttttagtaaaaaaa |
39691036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 39683756 - 39683949
Alignment:
| Q |
1 |
aacaaagggcatgttccagtgctagtagggaaaaaggaagaagaagaagatatggagaggatttgggtgagcatcaaagtgattcaccatcccaaaattg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||| | || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
39683756 |
aacaaagggcatgttccggtgctagtaagcaaa------ggaggagaagatatggagaggatttgggtgagcatcaaagtgattcatcatccaaaaattg |
39683849 |
T |
|
| Q |
101 |
ttgaattgttggaacaatctgctaaagaatatggataccaacaaggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattcttgctaacat |
200 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||| ||| |||| ||||||||||||||| |
|
|
| T |
39683850 |
ttgaattcttagaacaatctgctaaagagtatggataccaacaaggtgtgcttagaatcatatgtgatgttgacgactttaaagacattcttgctaacat |
39683949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 644 - 687
Target Start/End: Original strand, 39691798 - 39691841
Alignment:
| Q |
644 |
taagacttgctcgtaatcttgataagtaaagtaagccaaaacat |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39691798 |
taagacttgctcgtaatcttgataagtaaaataagccaaaacat |
39691841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University