View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_44 (Length: 202)
Name: NF12622_low_44
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 2693006 - 2693173
Alignment:
| Q |
19 |
ggtagaccatagttggtttttgttttcatcaaggataactaaattaccgttttctgttatagtaaaagaaccaccattcccattgatgggtgtgtttctg |
118 |
Q |
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| T |
2693006 |
ggtagaccatagttggtttttgttttcatcaaggataactaaattaccgttttctgttatagtaaaagaaccaccattgccattgatgggtgtgtttctg |
2693105 |
T |
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| Q |
119 |
tttgcaacccaaataacttctggaccaggaatgttgtagtaccaaattccaacataacgagaagaaga |
186 |
Q |
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| T |
2693106 |
tttgcaacccaaataacttctggaccaggaatgttgtagtaccaaattccaacataacgagaagaaga |
2693173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 2700712 - 2700875
Alignment:
| Q |
23 |
gaccatagttggtttttgttttcatcaaggataactaaattaccgttttctgttatagtaaaagaaccaccattcccattgatgggtgtgtttctgtttg |
122 |
Q |
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| T |
2700712 |
gaccaaagttggtttttgtttccatcaaggataactaagtttccgtttgttgatacagtgaaggaaccaccgtttccattgatgggtttgtttctgtttg |
2700811 |
T |
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| Q |
123 |
caacccaaataacttctggaccaggaatgttgtagtaccaaattccaacataacgagaagaaga |
186 |
Q |
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| T |
2700812 |
caacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgtaacgtgaagaaga |
2700875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 14522087 - 14522250
Alignment:
| Q |
23 |
gaccatagttggtttttgttttcatcaaggataactaaattaccgttttctgttatagtaaaagaaccaccattcccattgatgggtgtgtttctgtttg |
122 |
Q |
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| T |
14522087 |
gaccatatttggtttttgttttcatcaaggataaccaaattaccattttccgctacagtgaaagaaccacggttgccatttatgggtgtgtttctatttg |
14522186 |
T |
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| Q |
123 |
caacccaaataacttctggaccaggaatgttgtagtaccaaattccaacataacgagaagaaga |
186 |
Q |
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| T |
14522187 |
caacccaaataatctgcggtccaggtatgttatagtaccaaataccgacataacgagaagaaga |
14522250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 31730853 - 31730783
Alignment:
| Q |
100 |
attgatgggtgtgtttctgtttgcaacccaaataacttctggaccaggaatgttgtagtaccaaattccaa |
170 |
Q |
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| T |
31730853 |
attgatgggattgtttctgtttgcaacccaaacaaatttttgaacaggaatgtttttgtaccaaataccaa |
31730783 |
T |
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