View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_45 (Length: 202)
Name: NF12622_low_45
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 39712906 - 39713074
Alignment:
| Q |
18 |
agatacatgaatcaactcgaagttcttctaagattgcaagtaaatcataagcataaccttctaaggttgaataacgctcaaaatcaaaataatctggatt |
117 |
Q |
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| T |
39712906 |
agatacatgaatcaactcgaagctcttctaagattgcaagtaaatcataagcataaccttctaaggttgaataacgctcaaaatcaaaataatctggatt |
39713005 |
T |
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| Q |
118 |
agttgtaccagctcccatgttgtcataaagtatgacacgaaactcatccaaaagatgaggtacgaggtg |
186 |
Q |
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| T |
39713006 |
agttgtaccagctcccatgttgtcataaagtatgacacgaaactcatccaaaagatgaggtacgaggtg |
39713074 |
T |
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Back To:
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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 5737304 - 5737160
Alignment:
| Q |
36 |
gaagttcttctaagattgcaagtaaatcataagcataaccttctaaggttgaataacgctcaaaatcaaaataatctggattagttgtaccagctcccat |
135 |
Q |
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| T |
5737304 |
gaagctcttccaaaatagcaagtaaatcataagcataaccttctaagcttgaatgtctttcagaatcaaagtattcagggttagtggtaccagcacccat |
5737205 |
T |
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| Q |
136 |
gttgtcataaagtatgacacgaaactcatccaaaagatgaggtac |
180 |
Q |
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| T |
5737204 |
gttatcatatagaacaacacgaaaatcatcaacaagataaggtac |
5737160 |
T |
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