View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_6 (Length: 564)
Name: NF12622_low_6
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 548
Target Start/End: Original strand, 43606673 - 43607206
Alignment:
| Q |
13 |
ttcactgaagctgacagtaaaattcaaacacatttccacacaatcaaacgacatctacctcttcacatgcaacactcaccctcttctttaaccaagtgtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606673 |
ttcactgaagctgacagtaaaattcaaacacatttccatacaatcaaacgacatctacctcttcacatgcaacactcaccctcttctttaaccaagtgtt |
43606772 |
T |
|
| Q |
113 |
cactcccatatccacgtgtcatcacctcctacctccttacttaaattaaattctaacatttttctcatcattatgtcacnnnnnnn-ccctagtgaactg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43606773 |
cactcccatatccacgtgtcatcacctcctacctccttacttaaattaaattctaacatttttctcatcattatgtcaccaaaaaaaccctagtgaactg |
43606872 |
T |
|
| Q |
212 |
aactgaactaaactaagagtctaagacatattcctaattcaatggctgaaactctcagggatgactactacggttaccacnnnnnnnnnnnnnnnnnnnn |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606873 |
aactgaactaaactaagagtctaagacatattcctaattcaatggctgaaactctcagggatgactactacggttaccaccagcagcagcagcagcag-- |
43606970 |
T |
|
| Q |
312 |
naaccaacccataacattcacccaaacaagaacaaggaagggatttcatccttctacttcacaactcatagtacttgctactcttgtaccttttggagca |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606971 |
-aaccaacccataacattcacccaaacaagaacaaggaagggatttcatccttctacttcacaactcatagtacttgctactcttgtaccttttggagca |
43607069 |
T |
|
| Q |
412 |
actcttctcattcttgctggtctcacactcactgccaccgttgtcggcctcgctgtcaccacccctctgttcattttcttcagccccattttgttagctg |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607070 |
actcttctcattcttgctggtctcacactcactgccaccgttgtcggcctcgctgtcaccacccctctgttcattttcttcagccccattttgttagctg |
43607169 |
T |
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| Q |
512 |
cggctgtcgtcattggtttggccatcgccggattttt |
548 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
43607170 |
cggctgtcgtcattggtttggccatcgccggattttt |
43607206 |
T |
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