View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_7 (Length: 564)
Name: NF12622_low_7
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Complemental strand, 3990227 - 3989694
Alignment:
| Q |
14 |
aggcatcaagaaattgtaccgtgctagagtttgattcaagattatcaactgcacccatccttgtgaaaacacggtcaactaccctaagagttgagaagcg |
113 |
Q |
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| T |
3990227 |
aggcatcaagaaattgtaccgtgctagagtttgattcaagattatcaactgcacccatccttgtgaaaacacggtcaactaccctaagagttgagaagcg |
3990128 |
T |
|
| Q |
114 |
ggcaggaacgtaacacccaacttgagcaatgataactatgagacacacttgttgaaggtaagtactctttccgctcctggggaaaaggaatatagaaata |
213 |
Q |
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| T |
3990127 |
ggcaggaacgtaacacccaacttgagcaatgataactatgagacacacttgttgaaggtaagtactctttccgctcctggggaaaaggaatatagaaata |
3990028 |
T |
|
| Q |
214 |
aatcttgagactatactcttcatctaaacaactagccacacaaaaagagtaaacttcgctgtagtttgcgaataattcgcatttaaactgtaagtaacac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990027 |
aatcttgagactatactcttcatctaaacaactagccacacaaaaagagtaaacttcgctgtagtttgcgaataattcgcatttaaactgtaagtaacac |
3989928 |
T |
|
| Q |
314 |
gtactaattttaaagaatgatgacgggttttaaggtactgtttgaaggaaaatacacaagacatgctcacatcacctaattaagtctagttttaaggtgt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3989927 |
gtactaattttaaagaatgatgacgggttttaaggtactgtttgaaggaaaatacacaagacatgctcacatcacctaattaagtctagttttaaggcgt |
3989828 |
T |
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| Q |
414 |
gttgttatcagatctttaaagcgacaacctcatctggnnnnnnnnttgttctgtatcctctgtactatatttacttatcacgcataagcacatacgcact |
513 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3989827 |
gttgttatcagatctttaaagcgacaacctcatct-gaaaaaaatttgttctgtatcgtctgtactatatttacttatcacgcataagcacatacgcact |
3989729 |
T |
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| Q |
514 |
tccgttttcttaccaaaagaatttagtcatgactc |
548 |
Q |
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| T |
3989728 |
tccgttttcttaccaaaagaatttagtcatgactc |
3989694 |
T |
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