View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_8 (Length: 556)
Name: NF12622_low_8
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 541
Target Start/End: Original strand, 45361731 - 45362257
Alignment:
| Q |
15 |
gacatcaatggtgccgctttacgtggctatgatattagcttatggttcagtgaaatggtggaagatattctctcccgatcaatgctccggcatcaatcgc |
114 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45361731 |
gacatcaatggtgccactttacgtggctatgatattagcttatggttcagtgaaatggtggaagatattctctcccgatcaatgctccggcatcaatcgc |
45361830 |
T |
|
| Q |
115 |
ttggttgctctgtttgcagttcctttactttcattccatttcattgcctctaacaatccttacaaaatgaacacacgcttcctcgtcgcagacacacttc |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45361831 |
ttcgttgctctgtttgcagttcctttactttcattccatttcattgcctctaacaatccttacaaaatgaacacacgcttcctcgtcgcagacacacttc |
45361930 |
T |
|
| Q |
215 |
aaaagattatcgtcttacttgctctcaccatttgggccaacgtcagcaaaaggggttgtttagaatggacaataacactcttctccatttcaacactccc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45361931 |
aaaagattatcgtcttacttgctctcaccatttgggccaacgtcagcaaaaggggttgtttagaatggacaataacactcttctccatttcaacactccc |
45362030 |
T |
|
| Q |
315 |
aaacactttggttatgggaatccctcttctcaaaggtatgtacggtggtgaattttctgggagtttgatggtacaaattgtggtccttcagtgtattatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362031 |
aaacactttggttatgggaatccctcttctcaaatgtatgtacggtggtgaattttctgggagtttgatggtacaaattgtggtccttcagtgtattatt |
45362130 |
T |
|
| Q |
415 |
tggtacacgttgatgttgttcatgtttgagtttagaggagcaagaacgcttatctcagaacagtttccagacactgctggtaccattgtttccattcatg |
514 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362131 |
tggtacacgttgattttgttcatgtttgagtttagaggagcaagaatgcttatctcagaacagtttccagacactgctggtaccattgtttccattcatg |
45362230 |
T |
|
| Q |
515 |
ttgactctgatgtgatgtcgttggatg |
541 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
45362231 |
ttgactctgatgtgatgtcgttggatg |
45362257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 541
Target Start/End: Original strand, 25038551 - 25039074
Alignment:
| Q |
15 |
gacatcaatggtgccgctttacgtggctatgatattagcttatggttcagtgaaatggtggaagatattctctcccgatcaatgctccggcatcaatcgc |
114 |
Q |
| |
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|||| |||||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||| ||||| || || |||||||| || || ||||| || |
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| T |
25038551 |
gacagcaatggtgccactttatgtagctatgatcttagcttatggatcagtaaaatggtggaaaatattttcacctgatcaatgttcaggaatcaaccgt |
25038650 |
T |
|
| Q |
115 |
ttggttgctctgtttgcagttcctttactttcattccatttcattgcctctaacaatccttacaaaatgaacacacgcttcctcgtcgcagacacacttc |
214 |
Q |
| |
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|| ||||| || ||||||||||| | ||||||||||||||||| || || ||||||||||||||||||||| | || | | || || ||||||| |
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| T |
25038651 |
tttgttgcactctttgcagttccacttctttcattccatttcatagcatcaaacaatccttacaaaatgaaccttaggtttttagcagctgatacacttc |
25038750 |
T |
|
| Q |
215 |
aaaagattatcgtcttacttgctctcaccatttgggccaacgtcagcaaaaggggttgtttagaatggacaataacactcttctccatttcaacactccc |
314 |
Q |
| |
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|||| | || ||||| | ||| | |||||| ||| || |||||||||||||||||||||||| ||||||||||| || | |||||||| || |
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| T |
25038751 |
aaaaactcataatcttatgtcttcttgctatttggagcaatttctccaaaaggggttgtttagaatggactataacactcttttcactctcaacacttcc |
25038850 |
T |
|
| Q |
315 |
aaacactttggttatgggaatccctcttctcaaaggtatgtacggtggtgaattttctgggagtttgatggtacaaattgtggtccttcagtgtattatt |
414 |
Q |
| |
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||||||||||||||||||||| ||| | || ||||| ||||| |||||||||||| || ||||| |||||||||||||| || ||||| ||||| ||| |
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| T |
25038851 |
aaacactttggttatgggaattcctttacttaaaggaatgta---tggtgaattttcaggtagtttaatggtacaaattgttgttcttcaatgtatcatt |
25038947 |
T |
|
| Q |
415 |
tggtacacgttgatgttgttcatgtttgagtttagaggagcaagaacgcttatctcagaacagtttccagacactgctggtaccattgtttccattcatg |
514 |
Q |
| |
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||||| || |||||| | |||||||||||||||||||||||||| | | || || ||||||||||| |||||||||||| |||||||||| || |||| |
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| T |
25038948 |
tggtatactttgatgcttttcatgtttgagtttagaggagcaaggttgttgatttctgaacagtttcctgacactgctggttccattgtttcaatccatg |
25039047 |
T |
|
| Q |
515 |
ttgactctgatgtgatgtcgttggatg |
541 |
Q |
| |
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|||| |||||||| ||||| ||||||| |
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| T |
25039048 |
ttgattctgatgtcatgtcattggatg |
25039074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 422
Target Start/End: Original strand, 33102204 - 33102330
Alignment:
| Q |
293 |
tcttctccatttcaacactcccaaacactttggttatgggaatccctcttctcaaaggtatgtacggtggtgaattttctgggagtttgatggtacaaat |
392 |
Q |
| |
|
||||||| |||||||| | || |||||||||||||||||||| || ||||||| || |||||| |||||||| ||| || | | ||||| ||| | |
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| T |
33102204 |
tcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgta---tggtgaatattccggtacccttatggttcaagt |
33102300 |
T |
|
| Q |
393 |
tgtggtccttcagtgtattatttggtacac |
422 |
Q |
| |
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|||||| ||||||||||| ||||||||||| |
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| T |
33102301 |
tgtggttcttcagtgtatcatttggtacac |
33102330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 422
Target Start/End: Complemental strand, 10838898 - 10838752
Alignment:
| Q |
273 |
tttagaatggacaataacactcttctccatttcaacactcccaaacactttggttatgggaatccctcttctcaaaggtatgtacggtggtgaattttct |
372 |
Q |
| |
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||||||||||| |||||| |||| || | |||||||| || |||||||||||||||||||| ||| | | | | |||||| |||||| | ||| |
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| T |
10838898 |
tttagaatggatgataacaatcttttcattatcaacacttcctaacactttggttatgggaattcctttgttaattgctatgta---tggtgattattca |
10838802 |
T |
|
| Q |
373 |
gggagtttgatggtacaaattgtggtccttcagtgtattatttggtacac |
422 |
Q |
| |
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|| || || ||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
10838801 |
ggtagcttaatggttcaagttgtggttcttcagtgtattatttggtacac |
10838752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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