View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12622_low_9 (Length: 543)
Name: NF12622_low_9
Description: NF12622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12622_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Original strand, 8892763 - 8893282
Alignment:
| Q |
8 |
ggaggagcacagacaaaagaagaagtcggagtatgcgttcaaggagttcgagaagaaggtggttcagcttagatctttggagtgcaagtatggtccgtac |
107 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8892763 |
ggaggagcataaacaaaagaagaagtcggagtatgcgttcaaggagttcgagaagaaggtggttcagcttagatctttggagtgcaagtatggtccgtac |
8892862 |
T |
|
| Q |
108 |
tccatgtcggaacggtctggttctgtgagaagaacgaaggaccctgtcgtggagaagcgagctaaggtggaagctttcagagcaaaggctgaagaagaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8892863 |
tccatgtcggaacggtctggttctgtgagaagaacgaaggaccctgtcgtggagaagcgagctaaggtggaagctttcagagcaaaggctgaagaagaga |
8892962 |
T |
|
| Q |
208 |
agatcaagcatgaaaaggcggtgagtgttacgaggtcaatgacactgaataacttgcaaatgggctgtcctcaagtttttcaagggattgtagggttttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8892963 |
agatcaagcatgaaaaggcggtgagtgttacgaggtcaatgacactgaataacttgcaaatgggctgtcctcaagtttttcaagggattgtagggttttc |
8893062 |
T |
|
| Q |
308 |
aagtgtgtgcatggaggcttttgaatctgtatacaacaaagccaaagttgccgaacaggagcgtgatgtgaagagaatattaccttaggaaaattgacat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8893063 |
aagtgtgtgcatggaggcttttgaatctgtatacaacaaagccaaagttgccgaacaggagcgtgatgtgaagagaatattaccttaggaaaattgacat |
8893162 |
T |
|
| Q |
408 |
ggatctgtatagatgatcaatcacccttttgcctaatgatcggtagattgcaatgtagcactggattgaagtcatgtccgacaatgactcaacacccaca |
507 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8893163 |
ggatctgtatagatgatcaatcacccttttgcgtaatgatcggtagattgcaatgtagcactggattgaagtcatgtccgacaatgactcaacacccaca |
8893262 |
T |
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| Q |
508 |
catgtagtttacattaaaat |
527 |
Q |
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|||||||||||||||||||| |
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| T |
8893263 |
catgtagtttacattaaaat |
8893282 |
T |
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