View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12623_high_1 (Length: 687)

Name: NF12623_high_1
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12623_high_1
NF12623_high_1
[»] chr4 (1 HSPs)
chr4 (11-672)||(13141562-13142223)


Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 11 - 672
Target Start/End: Complemental strand, 13142223 - 13141562
Alignment:
Q  11 cagagagtacatgagtaaaatagaaacatatcatcgttctcgttaaacaaaactaatgcatgacactttttattgaagcagaagtgtatgcccttctaat 110  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13142223 cagagagtaggtgagtaaaatacaaacatatcaccgttctcgttaaacaaaactaatgcatgacactttttattgaagcagaaatgtatgcccttctaat 13142124  T
Q  111 gatacggagaaacagaatgtataaatgtaataaagaaaaatagaagcaaaatttcacaaacaagaagcagaaaacaaagaagggatatataatgaagctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13142123 gatacggagaaacagaatgtataaatgtaataaagaaaaatagaagcaaaatttcacaaacaagaagcagaaaacaaagaagggatatataatgaagctt 13142024  T
Q  211 tctcataattgaaaatagttttctttaaaacaaacacctgaaatttgccaaaaaagtaacagaatcttaggaagagagttatcactacatactcttgcca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13142023 tctcataattgaaaatagttttctttaaaacaaacacctgaaatttgccaaaaaagtaacagaatcttaggaagagggttatcactacatactcttgcca 13141924  T
Q  311 atcatcacgagctgttccctccaaatacctcaaatatgcagccaatgcatttagtacattatatgttccacctccaacaacatttcctttttgtgtaaca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13141923 atcatcacgagctgttccctccaaatacctcaaatatgcagccaatgcatttagtacattatatgttccacctccaacaacatttcctttttgtgtaaca 13141824  T
Q  411 aacacagactcatttggttcacttgactgaatctgtctgaagctataacttctcgcgttgttctcactagatttcagcctttttctgcctaacaaggttt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13141823 aacacagactcatttggttcacttgactgaatctgtctgaagctataacttctcgcgttgttctcactagatttcagcctttttctgcctaacaaggttt 13141724  T
Q  511 cagctgatgtctccttgatcaaattccagtcatctcttgatttatgtcggttcttagccataaatcccattatatcatcatacacaggaatatcacctaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13141723 cagctgatgtctccttgatcaaattccagtcatctcttgatttatgtcggttcttagccataaatcccattatatcatcatacacaggaatatcacctaa 13141624  T
Q  611 ttcagtgaacaattatcacgtgacttttggaaacaccataaagtgcatcaacatatccaata 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13141623 ttcagtgaacaattatcacgtgacttttggaaacaccataaagtgcatcaacatatccaata 13141562  T

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