View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12623_high_3 (Length: 448)

Name: NF12623_high_3
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12623_high_3
NF12623_high_3
[»] chr4 (1 HSPs)
chr4 (17-434)||(45671444-45671861)
[»] chr8 (3 HSPs)
chr8 (17-114)||(12811922-12812019)
chr8 (38-111)||(34830887-34830960)
chr8 (32-90)||(36350298-36350356)
[»] chr7 (3 HSPs)
chr7 (17-114)||(5230014-5230111)
chr7 (53-90)||(28500180-28500217)
chr7 (41-90)||(28470255-28470304)
[»] chr6 (1 HSPs)
chr6 (32-93)||(5652948-5653009)
[»] chr3 (3 HSPs)
chr3 (32-113)||(249323-249404)
chr3 (38-93)||(38396781-38396836)
chr3 (32-92)||(19142271-19142331)
[»] chr1 (1 HSPs)
chr1 (32-92)||(46039607-46039667)
[»] chr2 (1 HSPs)
chr2 (22-94)||(25524871-25524943)
[»] chr5 (3 HSPs)
chr5 (32-111)||(20543490-20543569)
chr5 (30-90)||(13810983-13811043)
chr5 (30-90)||(13959663-13959723)


Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 45671444 - 45671861
Alignment:
Q  17 agaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatgaattca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45671444 agaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatgaattca 45671543  T
Q  117 gcagcacctcctggtaactcttctcttatcaaattcctttctctatctgcttgtgtgtttcttgtggttggaatgtgtggtgcaaacatatagataatgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45671544 gcagcacctcctggtaactcttctcttatcaaattcctttctctatctgcttgtgtgtttcttgtggttggaatgtgtggtgcaaacatatagataatgt 45671643  T
Q  217 ttcgagtctgaaaataattcggagtttaacgaggagggacaccgataattcggagtttaactgaaagataaataaatatgacaaataattatttcaacta 316  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45671644 ttcgagtctgaaaataattcggagtttaactaggagggacaccgataattcggagtttaactgaaagataaataaatatgacaaataattatttcaacta 45671743  T
Q  317 agattctaattcggctactccaaatcgaacatatagttaatatggcatgtcttttgtgcacaattgttttatttctgattttttgtgtgttcaagatctg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45671744 agattctaattcggctactccaaatcgaacatatagttaatatggcatgtcttttgtgcacaattgttttctttctgattttttgtgtgttcaagatctg 45671843  T
Q  417 tgcaattcagtccctatg 434  Q
    ||||||||||||| ||||    
T  45671844 tgcaattcagtccttatg 45671861  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 12812019 - 12811922
Alignment:
Q  17 agaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatgaatt 114  Q
    ||||||||| | |||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| ||||||||    
T  12812019 agaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaatt 12811922  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 34830960 - 34830887
Alignment:
Q  38 gcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatga 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||    
T  34830960 gcttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctccaacagaggaaaactctatga 34830887  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 36350298 - 36350356
Alignment:
Q  32 aagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctc 90  Q
    |||||||| |||||| | || || ||||||||||||||||||||||||||  |||||||    
T  36350298 aagaaggcatatgaattatctgtgctttgtgatgctgaagttgctcttatagtcttctc 36350356  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 5230014 - 5230111
Alignment:
Q  17 agaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatgaatt 114  Q
    ||||||||| | || ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  ||||| || || ||||||||    
T  5230014 agaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatgaatt 5230111  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 28500217 - 28500180
Alignment:
Q  53 gttctttgtgatgctgaagttgctcttatcatcttctc 90  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  28500217 gttctctgtgatgctgaagttgctcttatcatcttctc 28500180  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 28470255 - 28470304
Alignment:
Q  41 tatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctc 90  Q
    |||||||| |||||||| |||||||||||  ||||||||||||| |||||    
T  28470255 tatgaactctcagttctatgtgatgctgagattgctcttatcattttctc 28470304  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 5652948 - 5653009
Alignment:
Q  32 aagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaa 93  Q
    ||||| ||||||||| | || ||||||||||||||||||||||||||||| |||||||||||    
T  5652948 aagaaagcttatgaattatctgttctttgtgatgctgaagttgctcttattatcttctccaa 5653009  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 249404 - 249323
Alignment:
Q  32 aagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatgaat 113  Q
    ||||| ||||||||||| |||||| | |||||||||||||||||||| ||  ||||||||| |||||||| ||| |||||||    
T  249404 aagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaat 249323  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 38396781 - 38396836
Alignment:
Q  38 gcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaa 93  Q
    |||||||||||||| |||||||||||||| || |||||||| ||| ||||||||||    
T  38396781 gcttatgaactttctgttctttgtgatgcagaggttgctctcatcgtcttctccaa 38396836  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 19142331 - 19142271
Alignment:
Q  32 aagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctcca 92  Q
    ||||| ||||||||| | || |||||||||||||| |||||||||||| |  |||||||||    
T  19142331 aagaaagcttatgaattatccgttctttgtgatgccgaagttgctcttgttgtcttctcca 19142271  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 46039667 - 46039607
Alignment:
Q  32 aagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctcca 92  Q
    ||||| |||| ||||||||| ||  | ||||||||||||||||||||||||||||||||||    
T  46039667 aagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctcca 46039607  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 25524871 - 25524943
Alignment:
Q  22 tggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaac 94  Q
    |||| |||||||||| ||| ||||  | || || ||||||||||||||||||||||||||  |||||||||||    
T  25524871 tggtttactcaagaaagctcatgagatctctgtgctttgtgatgctgaagttgctcttattgtcttctccaac 25524943  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 20543569 - 20543490
Alignment:
Q  32 aagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatga 111  Q
    ||||||||||||||||| ||  | |||||||||||||| |||||||| || || ||||| | |||||| ||||| |||||    
T  20543569 aagaaggcttatgaactctctctcctttgtgatgctgaggttgctctcattattttctctagccgtggaaaactctatga 20543490  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 13811043 - 13810983
Alignment:
Q  30 tcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctc 90  Q
    |||| |||||| | |||||||||||| | ||||||||||| |||||||| ||||| |||||    
T  13811043 tcaaaaaggctgaagaactttcagttttgtgtgatgctgatgttgctctcatcattttctc 13810983  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 13959663 - 13959723
Alignment:
Q  30 tcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctc 90  Q
    |||| |||||| | |||||||||||| | ||||||||||| |||||||| ||||| |||||    
T  13959663 tcaaaaaggctgaagaactttcagttttgtgtgatgctgatgttgctctcatcattttctc 13959723  T

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