View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12623_high_6 (Length: 437)

Name: NF12623_high_6
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12623_high_6
NF12623_high_6
[»] chr3 (12 HSPs)
chr3 (17-427)||(19850014-19850424)
chr3 (24-231)||(20035276-20035483)
chr3 (24-201)||(19839661-19839838)
chr3 (17-202)||(19957312-19957497)
chr3 (32-171)||(19819774-19819913)
chr3 (17-167)||(19833072-19833222)
chr3 (182-388)||(26648136-26648342)
chr3 (18-136)||(20005994-20006111)
chr3 (236-360)||(19813395-19813519)
chr3 (60-127)||(19813562-19813629)
chr3 (283-349)||(19952274-19952340)
chr3 (182-256)||(20015092-20015166)
[»] chr5 (3 HSPs)
chr5 (24-288)||(27472903-27473170)
chr5 (302-425)||(27472787-27472910)
chr5 (182-256)||(9816187-9816261)
[»] chr8 (1 HSPs)
chr8 (214-424)||(22685232-22685443)
[»] chr1 (1 HSPs)
chr1 (245-339)||(1718242-1718336)


Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 19850424 - 19850014
Alignment:
Q  17 caacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19850424 caacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttgacgatccacatt 19850325  T
Q  117 tgatgatataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctcagataagcacactcgg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19850324 tgatgatataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctcagataagcacactcgg 19850225  T
Q  217 tcactacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcttttgaaactggccctt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19850224 tcactacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttttcttttgaaactggccctt 19850125  T
Q  317 tcactggtattatcttttcataatctgccgaaggggttgaacaacatttgttcaataaatgattagattcattgactttacgaccacgtttacactcttt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19850124 tcactggtattatcttttcataatctgccgaaggggttgaacaacattcgttcaataaatgattagattcattgactttacgaccacgtttacactcttt 19850025  T
Q  417 caacacaggtt 427  Q
    |||||||||||    
T  19850024 caacacaggtt 19850014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 20035276 - 20035483
Alignment:
Q  24 ttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgat 123  Q
    ||||||| ||||||||| ||||||||||| |||| |||||||| |||| |||||||||||||| ||||||||||||||||||| |||||||| |||||||    
T  20035276 ttccccattgatgtcattgacatcatttctatcataaaatggactctttatttcatcttcatcaccacatccagctatttcaccatccacatatgatgat 20035375  T
Q  124 ataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctcagataagcacactcggtcactac 223  Q
    ||||||||||||| ||||||||||| |||||||||||  ||||| | | ||| ||| |   |||||||||||||||||||||| || |||  |||||||     
T  20035376 ataaaatcaccaaattcagaattagacaaagagacttcatttctcacagcatagctacaaatttcaccttgagtctcagataaacaaactttgtcactag 20035475  T
Q  224 aaatcctt 231  Q
    ||||||||    
T  20035476 aaatcctt 20035483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 19839838 - 19839661
Alignment:
Q  24 ttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgat 123  Q
    ||||||| ||||||||| ||||||||||| |||| ||||| || ||||||||||||||||||| |  |||||||| ||||||| ||||||||||||||||    
T  19839838 ttccccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgat 19839739  T
Q  124 ataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctca 201  Q
    ||||||||||||| ||||||||||| ||| ||||||| |||||||||| ||| ||| |  || |||||||||||||||    
T  19839738 ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaactatcaccttgagtctca 19839661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 19957497 - 19957312
Alignment:
Q  17 caacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatt 116  Q
    |||||| ||||||| ||||||| | ||||||||||| |||| |||||||| ||||||||||||||||||| | | ||||||||||||||| ||||| |||    
T  19957497 caacactttccccattgatgtcgttgacatcatttctatcataaaatggactcttgatttcatcttcatcacaaaatccagctatttcaccatccatatt 19957398  T
Q  117 tgatgatataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctcag 202  Q
    ||||||||| || ||||||| ||||||| ||| |||||||||||  ||||||||| ||| ||| | ||||||||||||||||||||    
T  19957397 tgatgatatgaattcaccaaattcagaactagacaaagagacttcatttctgatagcatcgctacagctttcaccttgagtctcag 19957312  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 19819913 - 19819774
Alignment:
Q  32 tgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgatataaaatc 131  Q
    ||||||||| ||||||||||| |||| ||||| || ||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||    
T  19819913 tgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcaccacatccaactatttcaccatccacttttgatgatataaaatc 19819814  T
Q  132 accaagttcagaattaggcaaagagactttgtttctgata 171  Q
    ||||| ||||||| ||| |||||||||||  |||||||||    
T  19819813 accaaattcagaactagacaaagagacttgatttctgata 19819774  T

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Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 19833222 - 19833072
Alignment:
Q  17 caacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatt 116  Q
    |||||| ||||||| |||||| || ||||||| ||| || | ||| |||| ||||| |||||||||||||||||||| | |||||||||| |||||||||    
T  19833222 caacactttccccattgatgtaattgacatcaattctattataaagtggactcttgctttcatcttcatccccacattcggctatttcaccatccacatt 19833123  T
Q  117 tgatgatataaaatcaccaagttcagaattaggcaaagagactttgtttct 167  Q
    |||||||||||||||||||| ||||||||||| |||||| |||| ||||||    
T  19833122 tgatgatataaaatcaccaaattcagaattagacaaagatacttcgtttct 19833072  T

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Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 182 - 388
Target Start/End: Complemental strand, 26648342 - 26648136
Alignment:
Q  182 tgctttcaccttgagtctcagataagcacactcggtcactacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctat 281  Q
    ||||||||||||||||||||||||| || |||| |||| || | |||||| ||| ||||||| |||||||||||| | |  |||| ||||||    ||||    
T  26648342 tgctttcaccttgagtctcagataaacagactctgtcattagacatccttgcttgtttgctcccatttgcatcttcagaatcatcctccaaactttctat 26648243  T
Q  282 tgaaacttcaatgttatcttttgaaactggccctttcactggtattatcttttcataatctgccgaaggggttgaacaacatttgttcaataaatgatta 381  Q
    ||||| |||||||||||||  ||||||||||| ||||| ||||| |||||||||||||| ||| |||| || |||||||| || || ||||||||| |||    
T  26648242 tgaaagttcaatgttatctactgaaactggccttttcagtggtaatatcttttcataatatgctgaagaggctgaacaactttggtccaataaatgctta 26648143  T
Q  382 gattcat 388  Q
    |||||||    
T  26648142 gattcat 26648136  T

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Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 20005994 - 20006111
Alignment:
Q  18 aacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacattt 117  Q
    ||||||||||||| | ||| ||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||| | | ||||||    
T  20005994 aacaccttccccattaatggcatcgacatcatttctatcacaaaatggatttttgatttcatcttcattcccacatccagcta-ttcaccaccaacattt 20006092  T
Q  118 gatgatataaaatcaccaa 136  Q
    |||||||||||||||||||    
T  20006093 gatgatataaaatcaccaa 20006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 236 - 360
Target Start/End: Complemental strand, 19813519 - 19813395
Alignment:
Q  236 ttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcttttgaaactggccctttcactggtattatcttttc 335  Q
    |||||||  ||||||||||||||||| |||| || ||| |||||||||||| |||||||||||||||||||| ||||| ||||| |||||  || |||||    
T  19813519 ttttgcttgcatttgcatctttaaactcatcctcgaaatcccctattgaaaattcaatgttatcttttgaaagtggccttttcagtggtaacatattttc 19813420  T
Q  336 ataatctgccgaaggggttgaacaa 360  Q
    ||||||||| |||| || |||||||    
T  19813419 ataatctgctgaagaggctgaacaa 19813395  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 19813629 - 19813562
Alignment:
Q  60 aaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgatataa 127  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||    
T  19813629 aaatggactcttgatttcatcttcatccccacatccagctatttcacttgccacatctgatgatataa 19813562  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 19952340 - 19952274
Alignment:
Q  283 gaaacttcaatgttatcttttgaaactggccctttcactggtattatcttttcataatctgccgaag 349  Q
    |||| ||||||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||| ||||    
T  19952340 gaaagttcaatgctatctttcgaaactggccttttcagtggtaatatcttttcataatctgctgaag 19952274  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 20015092 - 20015166
Alignment:
Q  182 tgctttcaccttgagtctcagataagcacactcggtcactacaaatcctttcttttttgctctcatttgcatctt 256  Q
    |||||||| |||||||||||||||| || |||| |||||||   |||||| |||  |||||| ||||||||||||    
T  20015092 tgctttcagcttgagtctcagataaacagactctgtcactagtcatccttacttccttgctcccatttgcatctt 20015166  T

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Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 27473170 - 27472903
Alignment:
Q  24 ttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgat 123  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  27473170 ttccccactgatgtcattgacatcattttcatcacaaaatgaattcttgatttcatcttcatccccatatcttgctatttcaccatccacatttgatgat 27473071  T
Q  124 ataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccat---tgcttctgctttcaccttgagtctcagataagcacactcggtcac 220  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||| |||||||||    
T  27473070 ataaaatcaccaagttcagaattagaaaaagagactttgtttctgataccatagcttcttctgctttcaccttgagtctcagataagcaccctcggtcac 27472971  T
Q  221 tacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaact 288  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  27472970 tacacatcctttcttttttgctctcatttgcatctttaaacccatcctttaaaacccctattgaaact 27472903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 425
Target Start/End: Complemental strand, 27472910 - 27472787
Alignment:
Q  302 ttgaaactggccctttcactggtattatcttttcataatctgccgaaggggttgaacaacatttgttcaataaatgattagattcattgactttacgacc 401  Q
    |||||||||||| ||||||||||| | |||||||| ||||| | |||  || ||||||| ||| | |||||||||||||||||||||||||||| | | |    
T  27472910 ttgaaactggccttttcactggtactctcttttcaaaatcttctgaataggctgaacaaaattcgctcaataaatgattagattcattgactttgccatc 27472811  T
Q  402 acgtttacactctttcaacacagg 425  Q
    ||  || |||||||| ||||||||    
T  27472810 acacttgcactcttttaacacagg 27472787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 9816261 - 9816187
Alignment:
Q  182 tgctttcaccttgagtctcagataagcacactcggtcactacaaatcctttcttttttgctctcatttgcatctt 256  Q
    ||||||||||||||||||||||||| || |||| ||||| | |||||||| ||| ||||||   |||||||||||    
T  9816261 tgctttcaccttgagtctcagataaacagactctgtcaccataaatccttgcttctttgcttcgatttgcatctt 9816187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 214 - 424
Target Start/End: Original strand, 22685232 - 22685443
Alignment:
Q  214 cggtcactacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcttttgaaactggcc 313  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22685232 cggtcactacacatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcctttgaaactggcc 22685331  T
Q  314 ctttcactggtattatcttttcataatctgccgaaggggttgaacaacat-ttgttcaataaatgattagattcattgactttacgaccacgtttacact 412  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    |||||||||||||||||||| |||||||| |  ||||  || ||||    
T  22685332 ctttcactggtattatcttttcataatctgctgaaggggttgaacaacataaccttcaataaatgattagattcgttgactttgccgccacacttgcact 22685431  T
Q  413 ctttcaacacag 424  Q
    ||||||||||||    
T  22685432 ctttcaacacag 22685443  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 1718336 - 1718242
Alignment:
Q  245 catttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcttttgaaactggccctttcactggtattatcttttcataa 339  Q
    |||||||||||| |||  | || ||||||  || |||||||| ||| |||||||||||||||| || ||  |||| ||||| |||||||||||||    
T  1718336 catttgcatcttcaaaatcttcctccaaacaccttattgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatcttttcataa 1718242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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