View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12623_low_10 (Length: 360)

Name: NF12623_low_10
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12623_low_10
NF12623_low_10
[»] chr2 (2 HSPs)
chr2 (12-345)||(12100659-12100988)
chr2 (216-346)||(5114702-5114832)
[»] chr1 (1 HSPs)
chr1 (175-345)||(11781206-11781376)
[»] scaffold0021 (1 HSPs)
scaffold0021 (216-305)||(148421-148510)
[»] chr4 (2 HSPs)
chr4 (218-346)||(33042420-33042547)
chr4 (224-346)||(8668884-8669006)
[»] chr8 (2 HSPs)
chr8 (216-346)||(17458416-17458546)
chr8 (251-346)||(21591159-21591254)
[»] chr5 (3 HSPs)
chr5 (218-344)||(19070468-19070594)
chr5 (218-346)||(5782984-5783112)
chr5 (251-346)||(11722284-11722379)
[»] chr7 (2 HSPs)
chr7 (251-346)||(3729536-3729631)
chr7 (251-346)||(17181404-17181499)
[»] chr6 (1 HSPs)
chr6 (15-55)||(11777584-11777624)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 345
Target Start/End: Original strand, 12100659 - 12100988
Alignment:
Q  12 ttggatggcatacatgtgcccttggccgtgtgtgtctgacaccgctctttcagcaatggtgcaagcacaagcagtaccagtaaaatcatttgcagtaatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  12100659 ttggatggcatacatgtgcccttggccgtgtgtgtctgacaccgctccttcagcaatggtgcaagcacaagcagtaccaataaaatcatttgcagtagtc 12100758  T
Q  112 ttggctggtcaaaacacaatctatgacagaccactcccaactccttgcattaaaggcgacgcgcgctttgagtatccgtattgggtaggaggagtataaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||     
T  12100759 ttggctggtcaaaacacaatctatgacagaccactcccaactccttgcattaaaggcgacgc----tttgagtatccgtattgggtaggaggagtataac 12100854  T
Q  212 cgtagtgtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaa 311  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12100855 cgtggtgtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaa 12100954  T
Q  312 agcgttggaaaacaatggcagcatggaaaatggt 345  Q
    ||| ||||||||||||||||||||||||||||||    
T  12100955 agctttggaaaacaatggcagcatggaaaatggt 12100988  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 346
Target Start/End: Original strand, 5114702 - 5114832
Alignment:
Q  216 gtgtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcg 315  Q
    ||||||| |||| ||||||| ||||| ||| | | ||| |||| |||||||| || || ||||| |||||||||| | |||||   ||| | |||||||     
T  5114702 gtgtagatgaatgcaagaatgcgttaagggttcgtttgtctcttaacaagggagataagccatactctgcacgtgccttaagcgataaaatcggaaagct 5114801  T
Q  316 ttggaaaacaatggcagcatggaaaatggtg 346  Q
    |||||||||| |||| |  ||||||||||||    
T  5114802 ttggaaaacattggctggttggaaaatggtg 5114832  T

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Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 175 - 345
Target Start/End: Complemental strand, 11781376 - 11781206
Alignment:
Q  175 cgctttgagtatccgtattgggtaggaggagtataaacgtagtgtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaa 274  Q
    ||||||||| ||||| |||||| ||||||||||| | ||| ||||||| |||| ||||| | | |||||||||| |||| ||||||||||||||||||||    
T  11781376 cgctttgagcatccgcattgggcaggaggagtatcaccgtggtgtagatgaatgcaagagtgcattacgggctaaattggctctaaacaagggtgagaaa 11781277  T
Q  275 ccatattctgcacgtgacctaagcaccaaattgggaaagcgttggaaaacaatggcagcatggaaaatggt 345  Q
    || || |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  11781276 ccgtactctgcatgtgacctaagcaccaaattgggaaagctttggaaaacaatggcggcatggaaaatggt 11781206  T

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Target: scaffold0021 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 148510 - 148421
Alignment:
Q  216 gtgtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaat 305  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | || |||||||    
T  148510 gtgtagaggaatgcaagaatgcgttacgggctagattgactctaaacaagggtgataaaccttattcggcacgtgacttgagtaccaaat 148421  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 346
Target Start/End: Complemental strand, 33042547 - 33042420
Alignment:
Q  218 gtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcgtt 317  Q
    |||||||||| ||||||| ||||| ||||| |||||||||| |||||||| || || || |||||||||||||||||||  |||||| | ||||||| ||    
T  33042547 gtagaggaatgcaagaatgcgttaagggctcgattgactcttaacaaggg-gataagccgtattctgcacgtgacctaaataccaaaatcggaaagcttt 33042449  T
Q  318 ggaaaacaatggcagcatggaaaatggtg 346  Q
    ||||||||  |||   |||||||||||||    
T  33042448 ggaaaacatcggcgagatggaaaatggtg 33042420  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 346
Target Start/End: Complemental strand, 8669006 - 8668884
Alignment:
Q  224 gaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcgttggaaaa 323  Q
    |||| ||||||  ||||| ||||| | |||||||| |||||||| || || ||||| |||||||||||| ||||||  ||| | | ||||| ||||||||    
T  8669006 gaatgcaagaaggcgttaagggctcgtttgactcttaacaagggagataagccatactctgcacgtgacttaagcaataaaatcgaaaagctttggaaaa 8668907  T
Q  324 caatggcagcatggaaaatggtg 346  Q
    ||  ||| |  ||||||||||||    
T  8668906 catcggcgggctggaaaatggtg 8668884  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 346
Target Start/End: Original strand, 17458416 - 17458546
Alignment:
Q  216 gtgtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcg 315  Q
    ||||| |||||| ||||||| ||||||||| |  ||| ||||| |||||||| || || || ||||||||||| |||||||| |||||| | |||||||     
T  17458416 gtgtaaaggaatgcaagaattcgttacgggatcaattaactcttaacaagggggataagccgtattctgcacgagacctaagtaccaaaataggaaagct 17458515  T
Q  316 ttggaaaacaatggcagcatggaaaatggtg 346  Q
    |||| ||||| |||| |  ||||||||||||    
T  17458516 ttgggaaacattggcgggctggaaaatggtg 17458546  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 21591159 - 21591254
Alignment:
Q  251 ttgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcgttggaaaacaatggcagcatggaaaatggtg 346  Q
    ||||| || ||||| || || |||||||||| ||||||||| ||||||| |||| | ||||||   |||||||||  ||||| |||||||||||||    
T  21591159 ttgacccttaacaaaggagacaaaccatattttgcacgtgatctaagcaacaaaattggaaaggtatggaaaacatcggcaggatggaaaatggtg 21591254  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 344
Target Start/End: Complemental strand, 19070594 - 19070468
Alignment:
Q  218 gtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcgtt 317  Q
    ||||| |||| ||||||| ||||| ||| | | |||||||| |||||||| || || || ||||||||||||||  |||| |||||| | ||||||| ||    
T  19070594 gtagaagaatgcaagaatgcgttaaggggtcgcttgactcttaacaagggggataagccgtattctgcacgtgatttaagtaccaaaataggaaagcatt 19070495  T
Q  318 ggaaaacaatggcagcatggaaaatgg 344  Q
    ||||||||  ||| || ||||||||||    
T  19070494 ggaaaacatcggcggcctggaaaatgg 19070468  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 346
Target Start/End: Complemental strand, 5783112 - 5782984
Alignment:
Q  218 gtagaggaattcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcgtt 317  Q
    ||||| |||| |||||||  |||| ||||| | |||||||| |||||||| || || || |||| |||||||||  |||| |||||| | ||||||| ||    
T  5783112 gtagaagaatgcaagaatgtgttaagggctcgcttgactcttaacaagggagataagccgtattttgcacgtgatttaagtaccaaaataggaaagcatt 5783013  T
Q  318 ggaaaacaatggcagcatggaaaatggtg 346  Q
    ||||||||  ||| || ||||||||||||    
T  5783012 ggaaaacatcggcggcctggaaaatggtg 5782984  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 11722284 - 11722379
Alignment:
Q  251 ttgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcgttggaaaacaatggcagcatggaaaatggtg 346  Q
    |||||||| |||||||| || |||||||| | ||||||||| ||||||| |||| | |||||||  || |||||| ||||||  ||||||||||||    
T  11722284 ttgactcttaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacattggcagggtggaaaatggtg 11722379  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 346
Target Start/End: Complemental strand, 3729631 - 3729536
Alignment:
Q  251 ttgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcgttggaaaacaatggcagcatggaaaatggtg 346  Q
    ||||| || ||||| || || |||||||||| ||||||||| ||||||| |||| | ||||||   |||||||||  ||||| |||||||||||||    
T  3729631 ttgacccttaacaaaggagacaaaccatattttgcacgtgatctaagcaacaaaattggaaaggtatggaaaacatcggcaggatggaaaatggtg 3729536  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 17181404 - 17181499
Alignment:
Q  251 ttgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagcgttggaaaacaatggcagcatggaaaatggtg 346  Q
    ||||| || ||||| || || |||||||||| ||||||||| ||||||| |||| | ||||||   |||||||||  ||||| |||||||||||||    
T  17181404 ttgacccttaacaaaggagacaaaccatattttgcacgtgatctaagcaacaaaattggaaaggtatggaaaacatcggcaggatggaaaatggtg 17181499  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 11777624 - 11777584
Alignment:
Q  15 gatggcatacatgtgcccttggccgtgtgtgtctgacaccg 55  Q
    ||||||||||| |||||| ||||| ||||||||||||||||    
T  11777624 gatggcatacacgtgcccctggccttgtgtgtctgacaccg 11777584  T

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