View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12623_low_11 (Length: 282)

Name: NF12623_low_11
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12623_low_11
NF12623_low_11
[»] chr1 (8 HSPs)
chr1 (1-248)||(8814324-8814571)
chr1 (47-214)||(235166-235333)
chr1 (49-214)||(251390-251555)
chr1 (47-214)||(246820-246987)
chr1 (49-204)||(231530-231691)
chr1 (56-124)||(4439822-4439890)
chr1 (72-157)||(18991182-18991267)
chr1 (236-264)||(235340-235368)
[»] chr6 (8 HSPs)
chr6 (64-204)||(7046809-7046949)
chr6 (72-213)||(7041474-7041615)
chr6 (76-214)||(7025732-7025876)
chr6 (74-214)||(9159491-9159637)
chr6 (130-214)||(7029849-7029933)
chr6 (130-214)||(9170853-9170937)
chr6 (76-204)||(7012796-7012930)
chr6 (74-118)||(9170791-9170835)
[»] chr3 (20 HSPs)
chr3 (72-204)||(9343823-9343955)
chr3 (72-187)||(41985606-41985721)
chr3 (56-124)||(9425535-9425603)
chr3 (87-204)||(9448307-9448424)
chr3 (63-124)||(9617549-9617610)
chr3 (72-124)||(9407344-9407396)
chr3 (57-157)||(9494861-9494961)
chr3 (72-124)||(9397763-9397815)
chr3 (75-187)||(9655380-9655492)
chr3 (75-121)||(9626569-9626615)
chr3 (63-124)||(9614039-9614100)
chr3 (75-124)||(9646450-9646499)
chr3 (50-118)||(9432852-9432920)
chr3 (63-202)||(9352870-9353009)
chr3 (74-184)||(41980834-41980944)
chr3 (63-124)||(9377055-9377116)
chr3 (57-118)||(9402342-9402403)
chr3 (57-118)||(9420581-9420642)
chr3 (72-124)||(9416551-9416603)
chr3 (72-124)||(16011768-16011820)
[»] chr7 (1 HSPs)
chr7 (68-202)||(3695664-3695797)
[»] chr2 (1 HSPs)
chr2 (63-124)||(20694387-20694448)
[»] chr5 (1 HSPs)
chr5 (50-123)||(18571064-18571137)
[»] chr8 (1 HSPs)
chr8 (72-122)||(44688873-44688923)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 8814571 - 8814324
Alignment:
Q  1 gtcgaccatcatccaagtcnnnnnnntagcccatagaagactcaccagtgaatatatcatccataatgatcacacaattccctttgggaacacacaaatc 100  Q
    |||||||||||||||||||       |||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8814571 gtcgaccatcatccaagtccaaaaaatagcccatagaaggatcacaagtgaagatatcatccataatgatcacacaattccctttgggaacacacaaatc 8814472  T
Q  101 cgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgccaacttcatccacttcttctccttttcgttaagctta 200  Q
    | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  8814471 caaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctccttttcgttaagctta 8814372  T
Q  201 aacatgtcaatcctgccaatcctggcacgatcataatcataatcatca 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8814371 aacatgtcaatcctgccaatcctggcacgatcataatcataatcatca 8814324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 235166 - 235333
Alignment:
Q  47 agtgaatatatcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaact 146  Q
    |||||| |||| |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||||||||| ||||||    
T  235166 agtgaagatattatccataatgatgactaaattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaact 235265  T
Q  147 ctatcccctaatgtcgccaacttcatccacttcttctccttttcgttaagcttaaacatgtcaatcct 214  Q
    |||||||||||  | |||||||||| |||||||||||||||||| ||||||||||||| || ||||||    
T  235266 ctatcccctaaatttgccaacttcacccacttcttctccttttcattaagcttaaacacgttaatcct 235333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 251555 - 251390
Alignment:
Q  49 tgaatatatcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactct 148  Q
    |||| |||| ||||||||||||||||||||||| |||  |||||||||||||||| |||||| ||||||||||||| ||  |||||||||||||||||||    
T  251555 tgaagatattatccataatgatcacacaattccgtttccgaacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactct 251456  T
Q  149 atcccctaatgtcgccaacttcatccacttcttctccttttcgttaagcttaaacatgtcaatcct 214  Q
    ||||||||   |||||||||| | ||||||||| |||||||| ||||||||||||| || ||||||    
T  251455 atcccctatattcgccaactttacccacttcttttccttttcattaagcttaaacacgttaatcct 251390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 246820 - 246987
Alignment:
Q  47 agtgaatatatcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaact 146  Q
    |||||| |||| |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| || |   |||||||||||||||||    
T  246820 agtgaagatattatccataatgatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaact 246919  T
Q  147 ctatcccctaatgtcgccaacttcatccacttcttctccttttcgttaagcttaaacatgtcaatcct 214  Q
     |||| |||||  | |||||||||| ||| ||||||||| || | ||||||||||||| |||||||||    
T  246920 gtatctcctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacaagtcaatcct 246987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 231530 - 231691
Alignment:
Q  49 tgaatatatcatccataatgatcacacaattccctttgggaacacacaaatcc------gaagcagaagcagaaaatgaacacagggaccccaagaacaa 142  Q
    |||| |||| |||||||||||| |||||||||||||| |||||||| ||||||      ||||||||||||||||||||||| |||||||||||||||||    
T  231530 tgaaaatattatccataatgatgacacaattcccttttggaacacataaatccaaagcagaagcagaagcagaaaatgaacatagggaccccaagaacaa 231629  T
Q  143 aactctatcccctaatgtcgccaacttcatccacttcttctccttttcgttaagcttaaaca 204  Q
    |||| ||||||||||  | |||||||||| ||||||| |||||||| | || ||||||||||    
T  231630 aactatatcccctaaattagccaacttcacccacttcatctcctttgcattgagcttaaaca 231691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 4439822 - 4439890
Alignment:
Q  56 atcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||||| |||| ||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  4439822 atcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaaca 4439890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 18991182 - 18991267
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaa 157  Q
    |||||||||||||||  |||| | ||||| ||||||||||||||||| |||||      ||||||||||||||| |||| ||||||    
T  18991182 acacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaa 18991267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 235340 - 235368
Alignment:
Q  236 atcataatcatcagcatcttcatcaatct 264  Q
    |||||||||||||||||||||||||||||    
T  235340 atcataatcatcagcatcttcatcaatct 235368  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 7046809 - 7046949
Alignment:
Q  64 taatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgc 163  Q
    |||||||||||||||||||||||| |||| ||||||| |||  |||||||||||| |||||      |||||||||||||||| ||||||||||  |||     
T  7046809 taatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgt 7046908  T
Q  164 caacttcatccacttcttctccttttcgttaagcttaaaca 204  Q
     ||||||| ||||||||||||||| || |||||||||||||    
T  7046909 taacttcacccacttcttctccttctcattaagcttaaaca 7046949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 72 - 213
Target Start/End: Original strand, 7041474 - 7041615
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgccaacttca 171  Q
    |||||||||||||||| ||| |||||||||||||||||| |||| || ||||| |     |||||||||||||| |||||||||||  | | ||||||||    
T  7041474 acacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttca 7041573  T
Q  172 tccacttcttctccttttcgttaagcttaaacatgtcaatcc 213  Q
     ||||||||||||||| || ||||| |||||||  |||||||    
T  7041574 cccacttcttctccttctcattaagtttaaacaaatcaatcc 7041615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 7025732 - 7025876
Alignment:
Q  76 aattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccc------caagaacaaaactctatcccctaatgtcgccaactt 169  Q
    |||||||||||| |||||||||||| |||||| |||||||||| ||||| |   ||||      |||||||||||| ||||| |||||  ||| ||||||    
T  7025732 aattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaaactcgtcaactt 7025831  T
Q  170 catccacttcttctccttttcgttaagcttaaacatgtcaatcct 214  Q
    || ||||||||||||||| || |||||||||||||  ||||||||    
T  7025832 cacccacttcttctccttctcattaagcttaaacaaatcaatcct 7025876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 9159637 - 9159491
Alignment:
Q  74 acaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaa------gaacaaaactctatcccctaatgtcgccaac 167  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||| ||| | |   |||||||      ||||||||| |||||||||||  |||  ||     
T  9159637 acaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaactcgttaat 9159538  T
Q  168 ttcatccacttcttctccttttcgttaagcttaaacatgtcaatcct 214  Q
    |||| ||||||||||||||| ||||||||||||||||  ||||||||    
T  9159537 ttcacccacttcttctccttctcgttaagcttaaacaaatcaatcct 9159491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 7029849 - 7029933
Alignment:
Q  130 accccaagaacaaaactctatcccctaatgtcgccaacttcatccacttcttctccttttcgttaagcttaaacatgtcaatcct 214  Q
    |||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||||| || |||||||||||||  ||||||||    
T  7029849 accccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatcct 7029933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 9170853 - 9170937
Alignment:
Q  130 accccaagaacaaaactctatcccctaatgtcgccaacttcatccacttcttctccttttcgttaagcttaaacatgtcaatcct 214  Q
    |||||||||||||||| |||||||||||  |||  || |||| ||||||||||||||| || |||||||||||||  ||||||||    
T  9170853 accccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatcct 9170937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 7012796 - 7012930
Alignment:
Q  76 aattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccc------caagaacaaaactctatcccctaatgtcgccaactt 169  Q
    |||||||||||| ||||||||||||||||||| | |||||||| ||||| |   ||||      |||||||||||  ||||| |||||  | | ||||||    
T  7012796 aattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaaacttgtcaactt 7012895  T
Q  170 catccacttcttctccttttcgttaagcttaaaca 204  Q
    || ||||||||||||||| || |||||||||||||    
T  7012896 cacccacttcttctccttctcattaagcttaaaca 7012930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 9170791 - 9170835
Alignment:
Q  74 acaattccctttgggaacacacaaatccgaagcagaagcagaaaa 118  Q
    ||||||||||| || |||||||||||| ||||||||| |||||||    
T  9170791 acaattcccttgggaaacacacaaatctgaagcagaaacagaaaa 9170835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 9343823 - 9343955
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgccaacttca 171  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||| |||||      ||||||||||||||| ||||||||||| || |  |||||||    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  172 tccacttcttctccttttcgttaagcttaaaca 204  Q
     ||||||||||||| | || | |||||||||||    
T  9343923 cccacttcttctccatctcatcaagcttaaaca 9343955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 41985606 - 41985721
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgccaacttca 171  Q
    |||||||| ||||||  |||| ||||||||||||||||||||||||| |||||      |||||||||||||||||||||||||||  |||||||||| |    
T  41985606 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 41985705  T
Q  172 tccacttcttctcctt 187  Q
     ||| |||||||||||    
T  41985706 cccatttcttctcctt 41985721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 9425535 - 9425603
Alignment:
Q  56 atcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||||| |||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  9425535 atcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaaca 9425603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 9448307 - 9448424
Alignment:
Q  87 ggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgccaacttcatccacttcttctcct 186  Q
    |||| ||||||||||||||||||||||||||| |||||      ||||||||||||||| ||||||||||| || |  ||||||| ||| ||||||||||    
T  9448307 ggaagacacaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctcct 9448406  T
Q  187 tttcgttaagcttaaaca 204  Q
    | || | |||||||||||    
T  9448407 tctcataaagcttaaaca 9448424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 9617610 - 9617549
Alignment:
Q  63 ataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||| ||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  9617610 ataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaaca 9617549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 9407344 - 9407396
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  9407344 acacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaaca 9407396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 9494961 - 9494861
Alignment:
Q  57 tcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatccccta 156  Q
    ||||| |||| ||| |||||||||||||||| ||| |||||||| ||||||||||||||||| |||||      ||||||||||||||| ||||||||||    
T  9494961 tcatcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatccccta 9494862  T
Q  157 a 157  Q
    |    
T  9494861 a 9494861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 9397763 - 9397815
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||||||||||||||| ||||||||||||| |||| ||||| |||||||||||    
T  9397763 acacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaaca 9397815  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 9655492 - 9655380
Alignment:
Q  75 caattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgccaacttcatcc 174  Q
    ||||||||||||| |||||||||||||||||| || |||||||| |||||       ||||| |||||||| |||||||||||  ||  |||||||| ||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  175 acttcttctcctt 187  Q
    | |||||||||||    
T  9655392 atttcttctcctt 9655380  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 9626615 - 9626569
Alignment:
Q  75 caattccctttgggaacacacaaatccgaagcagaagcagaaaatga 121  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  9626615 caattccctttggaaacacacaaatccgaagctgatgcagaaaatga 9626569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 9614100 - 9614039
Alignment:
Q  63 ataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||| ||| |||||||| ||||||| || ||||| ||| |||||||||||||||||||||||    
T  9614100 ataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaaca 9614039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 9646499 - 9646450
Alignment:
Q  75 caattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    ||||||||||||| |||||||||||||||||| || |||||||| |||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaaca 9646450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 9432852 - 9432920
Alignment:
Q  50 gaatatatcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaa 118  Q
    ||||| |||||| |||| ||| | ||||||||||| || ||||||||||||||| || |||||||||||    
T  9432852 gaatacatcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaa 9432920  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 9352870 - 9353009
Alignment:
Q  63 ataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcg 162  Q
    |||| ||| |||||||| |||||||||| ||||| |||| || ||||||||||||| |||||      |||||  |||||||| ||| |||||||| |      
T  9352870 ataaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttt 9352969  T
Q  163 ccaacttcatccacttcttctccttttcgttaagcttaaa 202  Q
     |||||||| ||||||||||||| | || | |||||||||    
T  9352970 tcaacttcacccacttcttctccatctcatcaagcttaaa 9353009  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 41980834 - 41980944
Alignment:
Q  74 acaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgccaacttcatc 173  Q
    |||||| ||||||  |||| ||||||  |||||||||||| |||| |||||      |||||||||||||||||||||||||||  ||| |||||| | |    
T  41980834 acaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacc 41980933  T
Q  174 cacttcttctc 184  Q
    || ||||||||    
T  41980934 catttcttctc 41980944  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 9377055 - 9377116
Alignment:
Q  63 ataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||| ||| |||||||| |||||||||| ||||| |||| |||||||||||| ||| |||||    
T  9377055 ataaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaaca 9377116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 9402342 - 9402403
Alignment:
Q  57 tcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaa 118  Q
    ||||| |||| ||| | |||||||||||| |||||||||||||| || ||||| ||||||||    
T  9402342 tcatcaataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9402403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 9420581 - 9420642
Alignment:
Q  57 tcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaa 118  Q
    ||||| |||| ||| | |||||||||||| |||||||||||||| || ||||| ||||||||    
T  9420581 tcatcaataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9420642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 9416551 - 9416603
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||||||||||||| | |||||||| |||| | || |||||||||||||||||    
T  9416551 acacaattccctttagtaacacacatatccaaggctgaagcagaaaatgaaca 9416603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 16011820 - 16011768
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    ||||||||||| || |  |||| |||||||||||||||||||||||| |||||    
T  16011820 acacaattcccattcgctacacccaaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 3695664 - 3695797
Alignment:
Q  68 gatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaacacagggaccccaagaacaaaactctatcccctaatgtcgccaac 167  Q
    |||||||||||||||||||| | || ||||||||||||||  ||||||||||||||| | |   || |||||||||||||||||||||||  ||  ||||    
T  3695664 gatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctacaac 3695763  T
Q  168 ttcatccacttcttctccttttcgttaagcttaaa 202  Q
    || || |||||||||| ||| || ||||| |||||    
T  3695764 ttgat-cacttcttcttcttctcattaagtttaaa 3695797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 20694448 - 20694387
Alignment:
Q  63 ataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaaca 124  Q
    |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  20694448 ataaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaaca 20694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 18571064 - 18571137
Alignment:
Q  50 gaatatatcatccataatgatcacacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaac 123  Q
    |||||||| || |||||  ||||||||||||||||||| ||||||||||||||||||||||  |||||| ||||    
T  18571064 gaatatattattcataaaaatcacacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaac 18571137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 44688923 - 44688873
Alignment:
Q  72 acacaattccctttgggaacacacaaatccgaagcagaagcagaaaatgaa 122  Q
    |||||||||||||||| || | ||||||||||||||| || ||||||||||    
T  44688923 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaa 44688873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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