View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12623_low_12 (Length: 273)
Name: NF12623_low_12
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12623_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 45971714 - 45971455
Alignment:
| Q |
1 |
gagatagagataaacatataagatgtcacatacggtatttgtattttgatgttcaaataacataattcaaagttaatcatgtttgtcatattgtgtgagt |
100 |
Q |
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| T |
45971714 |
gagatagagataaacatataagatgtcacatacggtatttgtattttgatgttcaaataacataattcaaagttaatcatgtttgtcatattgtgtgagt |
45971615 |
T |
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| Q |
101 |
ctatattatcaaataaatgtatgaacttattcagttgtttcaaatgcatccctcacattagaaacttgatgtcattatagtcttgtaaatatcaacggag |
200 |
Q |
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| T |
45971614 |
ctatattatcaaataaatgtatgaacttattcagttgtttcaaatgcatccctcacattagaaacttaatgtcattatagtcttgtaaatatcaacggaa |
45971515 |
T |
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| Q |
201 |
ggacgaatttattgatattattcaatttcaaatatcagtaatatggaggattgtgttgat |
260 |
Q |
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| T |
45971514 |
ggacgaatttattgatattattcaatttcaaatatcagtaatatggaggattgtgttgat |
45971455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 393358 - 393389
Alignment:
| Q |
36 |
tatttgtattttgatgttcaaataacataatt |
67 |
Q |
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| T |
393358 |
tatttgtattttgatgttcaaataacataatt |
393389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 35620789 - 35620848
Alignment:
| Q |
2 |
agatagagataaacatataagatgtcacatacggtatttgtattttgatgttcaaataac |
61 |
Q |
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| T |
35620789 |
agatagagataagcatatacggtgtcacatatggtagttgtattttgatgttcaaataac |
35620848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17753765 - 17753704
Alignment:
| Q |
1 |
gagatagagataaacatataagatgtcacatacggtatttgtattttgatgttcaaataaca |
62 |
Q |
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|||||||||||| ||||||| | |||||||||||| | ||| ||||||||||||||||||| |
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| T |
17753765 |
gagatagagatagacatatatggtgtcacatacggcgtatgttttttgatgttcaaataaca |
17753704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 45952811 - 45952773
Alignment:
| Q |
24 |
tgtcacatacggtatttgtattttgatgttcaaataaca |
62 |
Q |
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| T |
45952811 |
tgtcacatatgatatttgtattttgatgttcaaataaca |
45952773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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