View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12623_low_2 (Length: 673)
Name: NF12623_low_2
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12623_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 22 - 665
Target Start/End: Original strand, 8028657 - 8029300
Alignment:
| Q |
22 |
ctatagagaatgagtgaggtggggaagagagaaacaaggatgaaagtggaacaagtactccacatgaatggaggaattggagaaacaagctattcaaata |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8028657 |
ctatagagaatgagtgaggtggggaagagagaaacaaggatgaaagtggaacaagtactccacatgaatggaggaattggagaaacaagctattcaaata |
8028756 |
T |
|
| Q |
122 |
actccttacttcaggtaaaatatcacacgtaaaatatcaattcatattacaaaatttagacaacatatatataagttataacactgtattttactatatt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8028757 |
actccttacttcaggtaaaatatcacacgtaaaatatcaattcatattacaaaatttagacaacatatatataagttataacactgtattttactatatt |
8028856 |
T |
|
| Q |
222 |
tgtcttacgacgaaaattttatatggtacagaaaaaggttatttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttc |
321 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8028857 |
tgttttacgacgaaaattttatatggtacagaaaaaggttatttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttc |
8028956 |
T |
|
| Q |
322 |
ccaaaaaggctaggtattgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaattagtaaagaaactttgccaag |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |
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| T |
8028957 |
ccaaaaaggctaggtattgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaaattagttgataaactttgccaag |
8029056 |
T |
|
| Q |
422 |
aacataatcacgagtctccagaataccaagtcttcatgaatgatcttcaagggaatgatttcaacaatatttttaggttacttgataggttcacagagaa |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8029057 |
aacataatcacgagtctccagaataccaagtcttcatgaatgatcttcaagggaatgatttcaacaacatttttaggttacttgataggttcacagagaa |
8029156 |
T |
|
| Q |
522 |
actaaatgatgaagtggaagatgggattggtggtccaatctttttctatggggctcctggttctttttatggcagaatttttccaacaaaaacaatgcat |
621 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8029157 |
actaaatgatgaagtggaagatgggattggtggtccaatctttttctatggggctcctggttctttttatggcaggatttttccaacaaaaacaatgcat |
8029256 |
T |
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| Q |
622 |
ttcattcattcctcttacagccttcaatggctctcacaggttct |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8029257 |
ttcattcattcctcttacagccttcaatggctctcacaggttct |
8029300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 386
Target Start/End: Complemental strand, 7298245 - 7298122
Alignment:
| Q |
263 |
tttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgg |
362 |
Q |
| |
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||||||||||||| ||| |||||||||||||||| | |||||||| |||||| | ||||| || | ||||||||||| |||||||||||||| |
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| T |
7298245 |
tttctttgacaaagccaataagagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctgg |
7298146 |
T |
|
| Q |
363 |
gccaaacactttgtttgtgatatc |
386 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
7298145 |
accaaacactttgtttgtggtatc |
7298122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 32709950 - 32709889
Alignment:
| Q |
337 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
398 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||| |
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| T |
32709950 |
attgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaa |
32709889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 32629116 - 32629054
Alignment:
| Q |
76 |
gtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
138 |
Q |
| |
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||||| |||||||||||||| |||||||||| |||||| |||| ||||||||| |||||||| |
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| T |
32629116 |
gtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggta |
32629054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 32710179 - 32710113
Alignment:
| Q |
72 |
acaagtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
138 |
Q |
| |
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||||||| | |||||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| |
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| T |
32710179 |
acaagtattgcacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggta |
32710113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 32704240 - 32704200
Alignment:
| Q |
337 |
attgcagatttgggttgttcttctgggccaaacactttgtt |
377 |
Q |
| |
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||||||||||||||||| |||| ||| |||||||||||||| |
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| T |
32704240 |
attgcagatttgggttgctcttatggaccaaacactttgtt |
32704200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 27736976 - 27736914
Alignment:
| Q |
337 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaa |
399 |
Q |
| |
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|||||||| |||||||| |||| ||||||||||||| |||| |||||||| ||| |||||||| |
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| T |
27736976 |
attgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaa |
27736914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 606
Target Start/End: Complemental strand, 27736751 - 27736710
Alignment:
| Q |
565 |
ttctatggggctcctggttctttttatggcagaatttttcca |
606 |
Q |
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|||||||| | ||||||||| ||||||||||||||||||||| |
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| T |
27736751 |
ttctatggagttcctggttcattttatggcagaatttttcca |
27736710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 27737676 - 27737620
Alignment:
| Q |
82 |
cacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
138 |
Q |
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|||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||| |
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|
| T |
27737676 |
cacatgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggta |
27737620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 5811657 - 5811596
Alignment:
| Q |
337 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
398 |
Q |
| |
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|||||||| |||||||| |||| ||| ||||||||||| || ||||| |||||| ||||||| |
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| T |
5811657 |
attgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaa |
5811596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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