View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12623_low_5 (Length: 442)
Name: NF12623_low_5
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12623_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 3387522 - 3387102
Alignment:
| Q |
17 |
tttctaccgcaaaattattcaaccaacatgtcaagttttcataaaccaccgtggaaaagacacaaagaagaatgttgcagggttattatacagagattta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
3387522 |
tttctaccgcaaaattattcaaccaacatgtcaagttttcataaaccaccgtggaatagacacaaagaagaatgttgcagggttactatacaaagattta |
3387423 |
T |
|
| Q |
117 |
acaagtatgggagtgagatcgtttttggactgtaagaacatgaaactaggggacaaactcagtcctagtatcgacaaagccatttttggttgtaaggttg |
216 |
Q |
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| T |
3387422 |
acaagtatgggagtgagatcgtttttggactgtaagaacatgaaactaggggacaaactcagtcctaatatcgacaaagccatttttgattgtaaggttg |
3387323 |
T |
|
| Q |
217 |
gtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacnnnnnnnngagtcgtgccaatcctttt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
3387322 |
gtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacaaaaaaaagagccgtgccaatcctttt |
3387223 |
T |
|
| Q |
317 |
cgacgtagaattgtcgcaacttatggtcaaggacgacggaacacgctctcagaaacaacttctaaggtacaatttagcactccaagaagccaaagatact |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3387222 |
cgacgtagaattgtcgcaacttatggtcaaggacgacggaacacgctctcaggaacaacttctaaggtacaatttagcactccaagaagccaaagatacc |
3387123 |
T |
|
| Q |
417 |
gtggcgttaccctttgcttct |
437 |
Q |
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| T |
3387122 |
gtggcgttaccctttgattct |
3387102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 3394039 - 3393649
Alignment:
| Q |
16 |
gtttctaccgcaaaattattcaaccaacatgtcaagttttcataaaccaccgtggaaaagacacaaagaagaatgttgcagggttattatacagagattt |
115 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
3394039 |
gtttctaccgcaaaattgttcaaccaacatgtcaagttttcataaaccaccgtgggatagacacaaagaagaacgttgcagggttattatacaaagattt |
3393940 |
T |
|
| Q |
116 |
aacaagtatgggagtgagatcgtttttggactgtaagaacatgaaactaggggacaaactcagtcctagtatcgacaaagccatttttggttgtaaggtt |
215 |
Q |
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||||| |||||||||||||||||||||||| ||| ||||||||||| ||| |||||||| || | |||||| ||||| ||| |||||||||||||| |
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| T |
3393939 |
aacaaacatgggagtgagatcgtttttggacagtatgaacatgaaaccaggagacaaactatttcatcatatcgataaagcaattattggttgtaaggtt |
3393840 |
T |
|
| Q |
216 |
ggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacnnnnnnnngagtcgtgccaatccttt |
315 |
Q |
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| T |
3393839 |
ggtgttaccgtgttctctcctcgttattgtgactcttattattgtctccacgaactcgctcttctgatggagacaaaaaaaagagtcgttcctatcttct |
3393740 |
T |
|
| Q |
316 |
tcgacgtagaattgtcgcaacttatggtcaaggacgacggaacacgctctcagaaacaacttctaaggtacaatttagcactccaagaagc |
406 |
Q |
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|||||||| || |||||| ||||||||||||||||||||||| |||||| |||||| |||| ||||| | ||||||||| ||||||| |
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| T |
3393739 |
tcgacgtaaaaccgtcgcagcttatggtcaaggacgacggaacttgctctccgaaacagcttcgaaggtttagtttagcactagaagaagc |
3393649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 35761616 - 35761698
Alignment:
| Q |
204 |
ggttgtaaggttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatgga |
286 |
Q |
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||||| || |||||||||| ||| || ||||| | |||||| |||||||||| |||||||||||| || |||||||||||||| |
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| T |
35761616 |
ggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatgga |
35761698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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