View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12623_low_6 (Length: 439)

Name: NF12623_low_6
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12623_low_6
NF12623_low_6
[»] chr5 (28 HSPs)
chr5 (17-220)||(27219318-27219523)
chr5 (263-429)||(27219651-27219816)
chr5 (279-413)||(27217018-27217153)
chr5 (168-220)||(27216970-27217022)
chr5 (17-64)||(22522785-22522832)
chr5 (17-64)||(6489037-6489084)
chr5 (17-64)||(6624806-6624853)
chr5 (17-56)||(40715941-40715980)
chr5 (18-64)||(22665187-22665233)
chr5 (19-64)||(4009899-4009944)
chr5 (17-56)||(13864374-13864413)
chr5 (17-56)||(14474864-14474903)
chr5 (17-60)||(16094087-16094130)
chr5 (17-64)||(26655494-26655541)
chr5 (17-64)||(26927079-26927126)
chr5 (17-64)||(32339765-32339812)
chr5 (17-64)||(34191463-34191510)
chr5 (17-63)||(34436881-34436927)
chr5 (17-55)||(42473924-42473962)
chr5 (17-62)||(3445233-3445278)
chr5 (17-50)||(20721080-20721113)
chr5 (17-66)||(37932360-37932409)
chr5 (17-61)||(11720924-11720967)
chr5 (384-412)||(24047803-24047831)
chr5 (238-266)||(27219254-27219282)
chr5 (17-49)||(31877958-31877990)
chr5 (20-64)||(31958452-31958496)
chr5 (19-47)||(38976702-38976730)
[»] chr3 (21 HSPs)
chr3 (16-56)||(11358263-11358303)
chr3 (17-64)||(38130943-38130990)
chr3 (17-66)||(48849745-48849794)
chr3 (17-64)||(4601874-4601921)
chr3 (17-64)||(25340908-25340955)
chr3 (17-56)||(51882192-51882231)
chr3 (17-50)||(10922306-10922339)
chr3 (17-56)||(334839-334878)
chr3 (17-64)||(913584-913631)
chr3 (17-56)||(14827555-14827594)
chr3 (17-64)||(16792958-16793005)
chr3 (17-56)||(25441492-25441531)
chr3 (17-64)||(29631216-29631263)
chr3 (17-56)||(34899127-34899166)
chr3 (17-64)||(41817529-41817576)
chr3 (17-56)||(45431978-45432017)
chr3 (17-63)||(22251445-22251491)
chr3 (17-66)||(35863795-35863844)
chr3 (23-64)||(53365940-53365981)
chr3 (17-66)||(55066582-55066631)
chr3 (17-61)||(35210118-35210162)
[»] chr8 (22 HSPs)
chr8 (17-64)||(12748931-12748978)
chr8 (17-64)||(32286348-32286395)
chr8 (18-64)||(15020792-15020838)
chr8 (17-62)||(32051518-32051563)
chr8 (17-64)||(13286161-13286207)
chr8 (17-64)||(19260563-19260610)
chr8 (17-64)||(24838154-24838201)
chr8 (21-64)||(27587255-27587298)
chr8 (17-64)||(30176403-30176450)
chr8 (17-63)||(12800885-12800931)
chr8 (17-49)||(18533699-18533731)
chr8 (17-56)||(444443-444482)
chr8 (17-56)||(8881305-8881344)
chr8 (17-64)||(10601793-10601840)
chr8 (17-64)||(22775658-22775705)
chr8 (17-56)||(23159471-23159510)
chr8 (17-64)||(33105421-33105468)
chr8 (17-64)||(44794923-44794970)
chr8 (17-54)||(13124357-13124394)
chr8 (17-61)||(6471541-6471585)
chr8 (16-56)||(29716692-29716732)
chr8 (17-49)||(42172242-42172274)
[»] chr4 (29 HSPs)
chr4 (282-411)||(37580461-37580592)
chr4 (17-56)||(11198358-11198397)
chr4 (17-56)||(49041973-49042012)
chr4 (17-64)||(54857599-54857646)
chr4 (17-55)||(47814244-47814282)
chr4 (17-66)||(49385288-49385337)
chr4 (17-69)||(42139874-42139926)
chr4 (17-56)||(3936657-3936696)
chr4 (17-56)||(7230310-7230349)
chr4 (17-56)||(8027389-8027428)
chr4 (17-64)||(9946457-9946504)
chr4 (17-56)||(10035295-10035334)
chr4 (17-56)||(11949755-11949794)
chr4 (17-56)||(19479469-19479508)
chr4 (17-64)||(20799378-20799425)
chr4 (17-64)||(23304000-23304047)
chr4 (17-64)||(28435232-28435279)
chr4 (17-72)||(33495595-33495650)
chr4 (17-64)||(43034326-43034373)
chr4 (17-56)||(54294414-54294453)
chr4 (17-56)||(56551584-56551623)
chr4 (18-56)||(2888905-2888943)
chr4 (18-56)||(29701119-29701157)
chr4 (17-50)||(44815971-44816004)
chr4 (17-62)||(49952657-49952702)
chr4 (17-49)||(675948-675980)
chr4 (17-49)||(20383518-20383550)
chr4 (16-48)||(23225894-23225926)
chr4 (17-53)||(50152233-50152269)
[»] chr2 (19 HSPs)
chr2 (17-64)||(10735815-10735862)
chr2 (17-64)||(29544657-29544704)
chr2 (17-61)||(27848188-27848232)
chr2 (17-64)||(24592830-24592877)
chr2 (17-64)||(27411122-27411169)
chr2 (17-64)||(42791325-42791372)
chr2 (17-64)||(44810735-44810782)
chr2 (17-56)||(11175815-11175854)
chr2 (17-64)||(16390633-16390680)
chr2 (17-56)||(20200735-20200774)
chr2 (17-56)||(25186234-25186273)
chr2 (17-64)||(28771612-28771659)
chr2 (17-56)||(31815879-31815918)
chr2 (17-55)||(18693655-18693693)
chr2 (17-55)||(22709115-22709153)
chr2 (17-54)||(4927443-4927480)
chr2 (17-49)||(20565074-20565106)
chr2 (16-64)||(25625745-25625793)
chr2 (17-49)||(31543042-31543074)
[»] chr7 (18 HSPs)
chr7 (17-56)||(14046603-14046642)
chr7 (17-56)||(14356633-14356672)
chr7 (17-64)||(19416544-19416591)
chr7 (17-56)||(27462428-27462467)
chr7 (19-64)||(145550-145595)
chr7 (17-64)||(8084457-8084504)
chr7 (17-64)||(18714478-18714525)
chr7 (17-56)||(19599175-19599214)
chr7 (17-64)||(21322205-21322252)
chr7 (17-64)||(36121682-36121729)
chr7 (17-56)||(42829226-42829265)
chr7 (17-63)||(2512339-2512385)
chr7 (17-55)||(19626518-19626556)
chr7 (22-64)||(21174394-21174436)
chr7 (17-55)||(46737815-46737853)
chr7 (18-51)||(23147321-23147354)
chr7 (17-49)||(20085758-20085790)
chr7 (24-64)||(31038506-31038546)
[»] chr6 (15 HSPs)
chr6 (17-56)||(8569739-8569778)
chr6 (14-63)||(2546207-2546256)
chr6 (17-64)||(655733-655780)
chr6 (17-64)||(7082976-7083023)
chr6 (17-64)||(17151266-17151313)
chr6 (17-64)||(27907935-27907982)
chr6 (17-56)||(29740512-29740551)
chr6 (17-56)||(33824911-33824950)
chr6 (17-55)||(2655020-2655058)
chr6 (17-50)||(8809336-8809369)
chr6 (18-63)||(26548282-26548327)
chr6 (17-54)||(33976274-33976311)
chr6 (17-49)||(291397-291429)
chr6 (18-66)||(27928088-27928136)
chr6 (17-57)||(28898886-28898926)
[»] chr1 (27 HSPs)
chr1 (17-64)||(34521174-34521221)
chr1 (19-56)||(19795108-19795145)
chr1 (17-66)||(27533273-27533322)
chr1 (17-56)||(1794626-1794665)
chr1 (17-56)||(3481591-3481630)
chr1 (17-64)||(5907829-5907876)
chr1 (21-56)||(6423753-6423788)
chr1 (17-56)||(8269360-8269399)
chr1 (17-56)||(8736465-8736504)
chr1 (17-64)||(12212325-12212372)
chr1 (17-64)||(17139501-17139548)
chr1 (17-52)||(25533003-25533038)
chr1 (17-56)||(34595902-34595941)
chr1 (17-56)||(41973285-41973324)
chr1 (17-64)||(42045356-42045403)
chr1 (17-56)||(49431985-49432024)
chr1 (17-55)||(12268977-12269015)
chr1 (17-55)||(17537717-17537755)
chr1 (18-56)||(34632200-34632238)
chr1 (18-64)||(37810511-37810557)
chr1 (17-55)||(41763148-41763186)
chr1 (18-55)||(2994789-2994826)
chr1 (17-49)||(3937521-3937553)
chr1 (20-64)||(23730363-23730407)
chr1 (24-56)||(24740832-24740864)
chr1 (17-49)||(28016189-28016221)
chr1 (23-55)||(52086145-52086177)
[»] scaffold0983 (1 HSPs)
scaffold0983 (17-64)||(3299-3346)
[»] scaffold0011 (1 HSPs)
scaffold0011 (17-56)||(185293-185332)
[»] scaffold1127 (1 HSPs)
scaffold1127 (17-54)||(1159-1196)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 27219318 - 27219523
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaa--agagtatatcgactatggggaaacacaacaaacatggactacagacacaat 114  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27219318 cataatatatgtaagatccagggttcaaaccccggccaccgccaaaaaaagagtatatcgactatgggaaaacacaacaaacatggactacagacacaat 27219417  T
Q  115 cacacatttaaaagttacacttaatatattaattattaatttgttatagttgtatcagacaatgtaaaactgtttgacgcatacattcaaccaaatcata 214  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27219418 catacatttaaaagttacacttaagatattaattattaatttgttatagttgtatcaggcaatgtaaaactgttttacgcatacattcaaccaaatcata 27219517  T
Q  215 ccacaa 220  Q
    ||||||    
T  27219518 ccacaa 27219523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 263 - 429
Target Start/End: Original strand, 27219651 - 27219816
Alignment:
Q  263 atgctcacgagactatcacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagag 362  Q
    ||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27219651 atgctcacgggactaccacaaggccacattaatatgtacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatatttaatagag 27219750  T
Q  363 ttttacactgttgagtatgttcaaattaaatccttacactaaattcaattcaatccgtctacctatg 429  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||    
T  27219751 ttttacactgttgagtatgtacaaattaaatccttacactaaattcaattcagt-cgtctacctatg 27219816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 279 - 413
Target Start/End: Original strand, 27217018 - 27217153
Alignment:
Q  279 cacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagagttttacactg-ttgag 377  Q
    ||||||||||| ||| ||||  |||||||||||  ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| | |||    
T  27217018 cacaaggccactttattatgttcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgtaaatacagttttacactgatcgag 27217117  T
Q  378 tatgttcaaattaaatccttacactaaattcaattc 413  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27217118 tatgtacaaattaaatccttacactaaattcaattc 27217153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 27216970 - 27217022
Alignment:
Q  168 atcagacaatgtaaaactgtttgacgcatacattcaaccaaatcataccacaa 220  Q
    |||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  27216970 atcagacattgtaaaactgttttacgcatacattcaaccaaattataccacaa 27217022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 22522832 - 22522785
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  22522832 cataatatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 22522785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 6489037 - 6489084
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||    
T  6489037 cataatatatgcaaggtctggggttcaaaccccggccaccaccaaaaa 6489084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 6624806 - 6624853
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  6624806 cataatatatgcaaggtccggggttcgaaccccggccaccaccaaaaa 6624853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 40715980 - 40715941
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  40715980 cataatatatgcaaggtccggggttcaaaccccggccacc 40715941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 22665233 - 22665187
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||    
T  22665233 ataaaatatgcaagatccggagttcaaaccccggccaccaccaaaaa 22665187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 4009899 - 4009944
Alignment:
Q  19 taatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||    
T  4009899 taatatatgcaagggccggggttcaaaccccggccaccaccaaaaa 4009944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 13864374 - 13864413
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  13864374 cataatatatgcaaggtccggggttcaaaccccgaccacc 13864413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 14474864 - 14474903
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  14474864 cataatatatgcaaggtccagggttcaaaccccggccacc 14474903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 16094087 - 16094130
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgcca 60  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||    
T  16094087 cataatatatgtaagatctggggttcaaaccccgaccaccgcca 16094130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 26655494 - 26655541
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||| ||| |||||||||| ||||||||||||| |||||||    
T  26655494 cataatatatgtaaggtccggggttcgaaccccggccaccaccaaaaa 26655541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 26927079 - 26927126
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||| ||| |||||||||| ||||||||||||| |||||||    
T  26927079 cataatatatgtaaggtccggggttcgaaccccggccaccaccaaaaa 26927126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 32339765 - 32339812
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||| || |||||||||| |||||||    
T  32339765 cataatatatgcaaggtccggggttcgaatcccggccaccaccaaaaa 32339812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 34191463 - 34191510
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||||||||||||||||  |||||||    
T  34191463 cataaaatatgcaaggtccggggttcaaaccccggccactaccaaaaa 34191510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 34436881 - 34436927
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaa 63  Q
    |||||||||||||||  ||||||||||||||||| ||||| ||||||    
T  34436881 cataatatatgcaagggccggggttcaaaccccgcccaccaccaaaa 34436927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 42473924 - 42473962
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  42473924 cataatatatgcaaggtccggggttcaaaccacggccac 42473962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 3445278 - 3445233
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaa 62  Q
    |||||| |||||||| ||||||||||||| |||||||||| |||||    
T  3445278 cataatgtatgcaaggtccggggttcaaatcccggccaccaccaaa 3445233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 20721080 - 20721113
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccg 50  Q
    ||||||||||||||| ||||||||||||||||||    
T  20721080 cataatatatgcaaggtccggggttcaaaccccg 20721113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 37932360 - 37932409
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaaga 66  Q
    ||||||||||||||| |||||||||| ||||| ||||||| | |||||||    
T  37932360 cataatatatgcaaggtccggggttcgaaccctggccaccacaaaaaaga 37932409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 11720924 - 11720967
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaa 61  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||    
T  11720924 cataatatatgcaaggtc-ggggttcaaaccccggccaccaccaa 11720967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Original strand, 24047803 - 24047831
Alignment:
Q  384 caaattaaatccttacactaaattcaatt 412  Q
    |||||||||||||||||||||||||||||    
T  24047803 caaattaaatccttacactaaattcaatt 24047831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 27219282 - 27219254
Alignment:
Q  238 catagtcacactctatacaaataccatgc 266  Q
    |||||||||||||||||||||||||||||    
T  27219282 catagtcacactctatacaaataccatgc 27219254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 31877958 - 31877990
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    |||||||||||||||||| ||||||||||||||    
T  31877958 cataatatatgcaagatcaggggttcaaacccc 31877990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 31958496 - 31958452
Alignment:
Q  20 aatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||||| |||||||||| |||||||| |||| |||||||    
T  31958496 aatatatgcaaggtccggggttcgaaccccggacaccaccaaaaa 31958452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 38976730 - 38976702
Alignment:
Q  19 taatatatgcaagatccggggttcaaacc 47  Q
    |||||||||||||||||||||||||||||    
T  38976730 taatatatgcaagatccggggttcaaacc 38976702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 11358263 - 11358303
Alignment:
Q  16 tcataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11358263 tcataatatatgcaagatccggggttcaaaccccggccacc 11358303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 38130990 - 38130943
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  38130990 cataatatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 38130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 48849794 - 48849745
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaaga 66  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||    
T  48849794 cataatatatgcaaggtccggggttcaaaccccggccaccacaaaaaaga 48849745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 4601874 - 4601921
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||| ||||||| |||||||||||||||||||||||| |||||||    
T  4601874 cataataaatgcaaggtccggggttcaaaccccggccaccaccaaaaa 4601921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 25340955 - 25340908
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  25340955 cataaaatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 25340908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 51882231 - 51882192
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  51882231 cataatatatgcaagatccagggttcaaaccccggccacc 51882192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 10922339 - 10922306
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccg 50  Q
    ||||||||||||||||||||||||||||||||||    
T  10922339 cataatatatgcaagatccggggttcaaaccccg 10922306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 334878 - 334839
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  334878 cataaaatatgcaaggtccggggttcaaaccccggccacc 334839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 913631 - 913584
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||||||||||||||| | |||||| |||||||    
T  913631 cataatatatgcaaggtccggggttcaaacctctgccaccaccaaaaa 913584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 14827555 - 14827594
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  14827555 cataaaatatgcaagatccggggtttaaaccccggccacc 14827594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 16793005 - 16792958
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  16793005 cataatatatgcaaggtccagggttcaaaccccggtcaccaccaaaaa 16792958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 25441531 - 25441492
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  25441531 cataatatatgcaaggtctggggttcaaaccccggccacc 25441492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 29631216 - 29631263
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| | |||| ||||||||||||||||| |||||||    
T  29631216 cataatatatgcaaggttcgggattcaaaccccggccaccaccaaaaa 29631263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 34899127 - 34899166
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  34899127 cataatatatgcaaggtccggggttcaaaccccgaccacc 34899166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 41817529 - 41817576
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||||||||||||||||  |||||| |||||||    
T  41817529 cataatatatgcaaggtccggggttcaaaccctagccaccaccaaaaa 41817576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 45431978 - 45432017
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  45431978 cataatatatgcaaggtccggggttcaaaccctggccacc 45432017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 22251491 - 22251445
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaa 63  Q
    ||||||||||||| | |||||||||| ||||||||||||| ||||||    
T  22251491 cataatatatgcacggtccggggttcgaaccccggccaccaccaaaa 22251445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 35863844 - 35863795
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaaga 66  Q
    ||||||||||||||| || |||||||||||| |||||||| | |||||||    
T  35863844 cataatatatgcaaggtctggggttcaaacctcggccaccacaaaaaaga 35863795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 53365940 - 53365981
Alignment:
Q  23 atatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||| ||||||||||||| |||||||||| |||||||    
T  53365940 atatgcaaggtccggggttcaaatcccggccaccaccaaaaa 53365981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 55066631 - 55066582
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaaga 66  Q
    ||||||||||||| | || |||||||||| |||||||||| |||||||||    
T  55066631 cataatatatgcatggtctggggttcaaatcccggccaccaccaaaaaga 55066582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 35210162 - 35210118
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaa 61  Q
    ||||| ||||||||| ||||||||||||||| |||||||| ||||    
T  35210162 cataaaatatgcaaggtccggggttcaaacctcggccaccaccaa 35210118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 12748931 - 12748978
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  12748931 cataatatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 12748978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 32286395 - 32286348
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  32286395 cataatatatgcaagattcggggttcaaaccccggccaccaccaaaaa 32286348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 15020792 - 15020838
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  15020792 ataatatatgcaagatccggggttcaaaccctggccaccaccaaaaa 15020838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 32051563 - 32051518
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaa 62  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||    
T  32051563 cataatatatgcaaggtccggggttcaaaccccggccaccaccaaa 32051518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 13286161 - 13286207
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13286161 cataatatatgcaagatccggg-ttcaaaccccggccaccgcaaaaaa 13286207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 19260610 - 19260563
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  19260610 cataatatatgtaaggtccggggttcaaaccccggccaccaccaaaaa 19260563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 24838201 - 24838154
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  24838201 cataaaatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 24838154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 27587255 - 27587298
Alignment:
Q  21 atatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  27587255 atatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 27587298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 30176450 - 30176403
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  30176450 cataatatatgcaaggtccggggttcaaaccccggacaccaccaaaaa 30176403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 12800931 - 12800885
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaa 63  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  12800931 cataatatatgcaaggtccggggttcaaaccccgaccaccaccaaaa 12800885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 18533699 - 18533731
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    |||||||||||||||||||||||||||||||||    
T  18533699 cataatatatgcaagatccggggttcaaacccc 18533731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 444443 - 444482
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  444443 cataatatatgcaaggtccggggtttaaaccccggccacc 444482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 8881305 - 8881344
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  8881305 cataatatatgcaaggtccagggttcaaaccccggccacc 8881344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 10601793 - 10601840
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||||| |||| ||||||||||||||||  |||||||    
T  10601793 cataatatatgcaagattcgggattcaaaccccggccacaaccaaaaa 10601840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 22775658 - 22775705
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||| |||||||| |||||||||||||||| ||||||| |||||||    
T  22775658 cataatttatgcaaggtccggggttcaaaccctggccaccaccaaaaa 22775705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 23159471 - 23159510
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  23159471 cataatatatgcaagattcggggttcaaaccccgaccacc 23159510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 33105421 - 33105468
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||||||||||||||||| ||| || |||||||    
T  33105421 cataatatatgcaaggtccggggttcaaaccccagcctccaccaaaaa 33105468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 44794923 - 44794970
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||||| ||||||||| |||||||||| |||||    
T  44794923 cataatatatgcaaggtccggagttcaaacctcggccaccgcaaaaaa 44794970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 13124394 - 13124357
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggcca 54  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  13124394 cataaaatatgcaaggtccggggttcaaaccccggcca 13124357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 6471541 - 6471585
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaa 61  Q
    ||||||||||||||  | |||||||||||||||||||||| ||||    
T  6471541 cataatatatgcaatgttcggggttcaaaccccggccaccaccaa 6471585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 29716732 - 29716692
Alignment:
Q  16 tcataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    |||||||||||||||| |||||| ||||||| |||||||||    
T  29716732 tcataatatatgcaaggtccgggattcaaactccggccacc 29716692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 42172274 - 42172242
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  42172274 cataatatatgcaagatccggagttcaaacccc 42172242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 411
Target Start/End: Original strand, 37580461 - 37580592
Alignment:
Q  282 aaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagagttttacactg-ttgagtat 380  Q
    |||||||| ||| ||||| |||  |||||| |||||||||||||| |||||||||| |||  || ||||| |  || | |||||||||||| ||||||||    
T  37580461 aaggccactttattatgctcctttatatctctacaaatatttacacgatgagatatgatttgatatacatataaaagacagttttacactgattgagtat 37580560  T
Q  381 gttcaaattaaat-ccttacactaaattcaat 411  Q
     | |||||||||| || |||||||||||||||    
T  37580561 atacaaattaaatcccctacactaaattcaat 37580592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 11198358 - 11198397
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  11198358 cataatatatgcaaggtccggggttcaaaccccggccacc 11198397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 49042012 - 49041973
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  49042012 cataatatatgcaaggtccggggttcaaaccccggccacc 49041973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 54857646 - 54857599
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  54857646 cataaaatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 54857599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 47814282 - 47814244
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  47814282 cataatatatgcaaggtccggggttcaaaccccggccac 47814244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 49385337 - 49385288
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaaga 66  Q
    ||||||||||| ||||||||| ||||||||| |||||||| |||||||||    
T  49385337 cataatatatgtaagatccggagttcaaacctcggccaccaccaaaaaga 49385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 42139874 - 42139926
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaagagta 69  Q
    ||||||| ||||||  |||||||||||||||||||||||||| ||||| ||||    
T  42139874 cataatacatgcaatgtccggggttcaaaccccggccaccgcaaaaaaaagta 42139926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 3936657 - 3936696
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  3936657 cataatatatgcaaggtccggggttcgaaccccggccacc 3936696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 7230310 - 7230349
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  7230310 cataatatatgcaaggtccggggttcaaacctcggccacc 7230349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 8027428 - 8027389
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  8027428 cataatatatgcaagatcgggggttcaaaccccgaccacc 8027389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 9946457 - 9946504
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||||||||||| ||||| |||||||    
T  9946457 cataaaatatgcaaggtccggggttcaaaccccgaccaccaccaaaaa 9946504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 10035295 - 10035334
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  10035295 cataatatatgcaaggtctggggttcaaaccccggccacc 10035334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 11949794 - 11949755
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  11949794 cataatatatgcaaggtccggggttcaaaccccgaccacc 11949755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 19479508 - 19479469
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  19479508 cataatatatgcaaggtccggggttcaaaccccgaccacc 19479469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 20799425 - 20799378
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||||||||| || |||| |||||||    
T  20799425 cataatatatgcaaggtccggggttcaaaccctggtcaccaccaaaaa 20799378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 23304047 - 23304000
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||| | ||||||||||||| |||||||    
T  23304047 cataatatatgcaaggtccggggtgcgaaccccggccaccaccaaaaa 23304000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28435279 - 28435232
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| | ||||||||||||||| |||||| |||||||    
T  28435279 cataatatatgcaaggttcggggttcaaaccccagccaccaccaaaaa 28435232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 33495595 - 33495650
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaagagtatat 72  Q
    ||||||||||||||||| | |||||||||||||  ||||| |||||||||| ||||    
T  33495595 cataatatatgcaagattcagggttcaaaccccaaccaccaccaaaaagaggatat 33495650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 43034373 - 43034326
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| || | ||||||||||||||||||| |||||||    
T  43034373 cataatatatgcaaggtctgaggttcaaaccccggccaccaccaaaaa 43034326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 54294453 - 54294414
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  54294453 cataatatatgcaaggtccggggttcaaaccccggacacc 54294414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 56551623 - 56551584
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  56551623 cataatatatgcaaggtccgaggttcaaaccccggccacc 56551584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 2888905 - 2888943
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  2888905 ataatatatgcaaggtccgcggttcaaaccccggccacc 2888943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 29701119 - 29701157
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  29701119 ataatatatgcaagttccggggttcaaactccggccacc 29701157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 44815971 - 44816004
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccg 50  Q
    ||||||||||||||| ||||||||||||||||||    
T  44815971 cataatatatgcaaggtccggggttcaaaccccg 44816004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 49952702 - 49952657
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaa 62  Q
    ||||||||||||||| || | |||||||| ||||||||||||||||    
T  49952702 cataatatatgcaaggtcagtggttcaaatcccggccaccgccaaa 49952657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 675948 - 675980
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  675948 cataatatatgcaaggtccggggttcaaacccc 675980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 20383518 - 20383550
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  20383518 cataatatatgcaaggtccggggttcaaacccc 20383550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 23225894 - 23225926
Alignment:
Q  16 tcataatatatgcaagatccggggttcaaaccc 48  Q
    |||||||||||||||||| ||||||||||||||    
T  23225894 tcataatatatgcaagattcggggttcaaaccc 23225926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 50152269 - 50152233
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggcc 53  Q
    ||||||||||||||| | |||||||||||||||||||    
T  50152269 cataatatatgcaaggttcggggttcaaaccccggcc 50152233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 10735862 - 10735815
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10735862 cataatatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 10735815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 29544657 - 29544704
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  29544657 cataatatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 29544704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 27848188 - 27848232
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaa 61  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||    
T  27848188 cataatatatgcaaggtccggggttcaaaccccggccaccaccaa 27848232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 24592877 - 24592830
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||    
T  24592877 cataatatatgcaaggtctggggttcaaaccccggccaccaccaaaaa 24592830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 27411122 - 27411169
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  27411122 cataatatatgcaaggtccggggttcgaaccccggccaccaccaaaaa 27411169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 42791325 - 42791372
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||||||||||||||||  |||||||    
T  42791325 cataatatatgcaaggtccggggttcaaaccccggccactaccaaaaa 42791372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 44810735 - 44810782
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||||||||||||||||| |||||| |||||||    
T  44810735 cataatatatgcaaggtccggggttcaaaccccagccaccaccaaaaa 44810782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 11175815 - 11175854
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  11175815 cataatatatgcaagatctggggttcaaactccggccacc 11175854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 16390633 - 16390680
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||| ||||||||||||| |||||||    
T  16390633 cataaaatatgcaaggtccggggttcgaaccccggccaccaccaaaaa 16390680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 20200735 - 20200774
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  20200735 cataatatatgcaaggtccagggttcaaaccccggccacc 20200774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 25186273 - 25186234
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  25186273 cataatatatgcaaggtccggggttcaaaccccagccacc 25186234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 28771612 - 28771659
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||||||||||||| ||||| |||||||| |||| |||||||    
T  28771612 cataatatatgcaagatccgcggttcgaaccccggacaccaccaaaaa 28771659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 31815918 - 31815879
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  31815918 cataatatatgcaaggtccggggttcaaaccccgaccacc 31815879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 18693693 - 18693655
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  18693693 cataatatatgcaagatccagggttcaaaccccgaccac 18693655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 22709115 - 22709153
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  22709115 cataaaatatgcaaggtccggggttcaaaccccggccac 22709153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 4927480 - 4927443
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggcca 54  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  4927480 cataatatatgtaaggtccggggttcaaaccccggcca 4927443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 20565106 - 20565074
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  20565106 cataatatatgcaaggtccggggttcaaacccc 20565074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 25625745 - 25625793
Alignment:
Q  16 tcataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||||| ||| |||||||||||||||| | ||||| |||||||    
T  25625745 tcataatatatgtaaggtccggggttcaaacccggaccaccaccaaaaa 25625793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 31543042 - 31543074
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  31543042 cataatatatgcaaggtccggggttcaaacccc 31543074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 14046642 - 14046603
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  14046642 cataatatatgcaagatacggggttcaaaccccggccacc 14046603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 14356672 - 14356633
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  14356672 cataatatatgcaagatacggggttcaaaccccggccacc 14356633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 19416544 - 19416591
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  19416544 cataaaatatgcaaggtccggggttcaaaccccggccaccaccaaaaa 19416591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 27462467 - 27462428
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  27462467 cataatatatgcaaggtccggggttcaaaccccggccacc 27462428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 145550 - 145595
Alignment:
Q  19 taatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||| |||||||||||||||||| ||||| |||||||    
T  145550 taatatatgcaaggtccggggttcaaaccccgaccaccaccaaaaa 145595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 8084457 - 8084504
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||| ||||||||||||| |||||||    
T  8084457 cataaaatatgcaaggtccggggttcgaaccccggccaccaccaaaaa 8084504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 18714478 - 18714525
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||    
T  18714478 cataatatatgcaaggtccggggttcaaaccccgtacaccaccaaaaa 18714525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 19599175 - 19599214
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  19599175 cataatatatgcaaggtccggggttcaaaccccgaccacc 19599214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 21322205 - 21322252
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||| |||||||| ||| |||||||||||||||||||| |||||||    
T  21322205 cataatgtatgcaaggtccagggttcaaaccccggccaccaccaaaaa 21322252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 36121682 - 36121729
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| |||||||||||||||||||||||  |||||||    
T  36121682 cataaaatatgcaaggtccggggttcaaaccccggccactaccaaaaa 36121729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 42829265 - 42829226
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  42829265 cataatatatgcaagctccggggttcaaactccggccacc 42829226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 2512339 - 2512385
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaa 63  Q
    ||||||||||||||| | || ||||||||||||||||||| ||||||    
T  2512339 cataatatatgcaaggtacgaggttcaaaccccggccaccaccaaaa 2512385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 19626556 - 19626518
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  19626556 cataatatatgcaaggtccggggttcaaacaccggccac 19626518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 21174394 - 21174436
Alignment:
Q  22 tatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||| ||| |||||||||||||||||||||||| |||||||    
T  21174394 tatatgaaagttccggggttcaaaccccggccaccaccaaaaa 21174436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 46737815 - 46737853
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  46737815 cataatatatgcaaggtccggggttcaaacaccggccac 46737853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 23147321 - 23147354
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccgg 51  Q
    |||||||||||||| |||||||||||||||||||    
T  23147321 ataatatatgcaaggtccggggttcaaaccccgg 23147354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 20085790 - 20085758
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  20085790 cataatatatgcaaggtccggggttcaaacccc 20085758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 31038546 - 31038506
Alignment:
Q  24 tatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||| || ||||||||||||||||||||| |||||||    
T  31038546 tatgcaaggtctggggttcaaaccccggccaccaccaaaaa 31038506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 8569739 - 8569778
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  8569739 cataatatatgcaaggtccggggttcaaaccccggccacc 8569778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 2546207 - 2546256
Alignment:
Q  14 catcataatatatgcaagatccggggttcaaaccccggccaccgccaaaa 63  Q
    |||||||||||||||||| | |||||||||||||||| ||||| ||||||    
T  2546207 catcataatatatgcaaggtacggggttcaaaccccgaccaccaccaaaa 2546256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 655780 - 655733
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| |||||||||| ||||||||||||  |||||||    
T  655780 cataatatatgcaaggtccggggttcgaaccccggccactaccaaaaa 655733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 7083023 - 7082976
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||||||||||| || ||||||||||| |||||| |||||||    
T  7083023 cataatatatgcaagatctggagttcaaaccccagccaccaccaaaaa 7082976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 17151266 - 17151313
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| || |||||||||||| |||||||| |||||||    
T  17151266 cataatatatgcaaggtctggggttcaaacctcggccaccaccaaaaa 17151313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 27907982 - 27907935
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||| ||||||||| || ||||||||||||||||||||| |||||||    
T  27907982 cataaaatatgcaaggtctggggttcaaaccccggccaccaccaaaaa 27907935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 29740512 - 29740551
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  29740512 cataatatacgcaaggtccggggttcaaaccccggccacc 29740551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 33824911 - 33824950
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  33824911 cataatatatgcaaggtccggggttcaaacctcggccacc 33824950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 2655058 - 2655020
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  2655058 cataaaatatgtaagatccggggttcaaaccccggccac 2655020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 8809336 - 8809369
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccg 50  Q
    |||||||||||||||||||| |||||||||||||    
T  8809336 cataatatatgcaagatccgaggttcaaaccccg 8809369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 26548282 - 26548327
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccaccgccaaaa 63  Q
    |||||||||||||| | ||||||||||||||| |||||| ||||||    
T  26548282 ataatatatgcaaggttcggggttcaaaccccagccaccaccaaaa 26548327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 33976274 - 33976311
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggcca 54  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  33976274 cataaaatatgcaaggtccggggttcaaaccccggcca 33976311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 291397 - 291429
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  291397 cataatatatgcaaggtccggggttcaaacccc 291429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 27928136 - 27928088
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccaccgccaaaaaga 66  Q
    |||||||||||||| |||||| |||||||| | |||||||| |||||||    
T  27928136 ataatatatgcaaggtccgggattcaaacctcagccaccgcaaaaaaga 27928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 28898886 - 28898926
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccg 57  Q
    ||||||||||| ||| ||||| |||||||||||||||||||    
T  28898886 cataatatatgaaaggtccggagttcaaaccccggccaccg 28898926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 34521221 - 34521174
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||||    
T  34521221 cataatatatgcaaggtccggggttcaaacctcggccaccaccaaaaa 34521174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 19795145 - 19795108
Alignment:
Q  19 taatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  19795145 taatatatgcaaggtccggggttcaaaccccggccacc 19795108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 27533273 - 27533322
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaaga 66  Q
    ||||||||||||||| | |||||||||||||||| ||||| |||||||||    
T  27533273 cataatatatgcaaggttcggggttcaaaccccgaccaccaccaaaaaga 27533322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 1794626 - 1794665
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  1794626 cataatatatgcaagatccggggttcaaacctcgaccacc 1794665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 3481591 - 3481630
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  3481591 cataatatatgcaaggtctggggttcaaaccccggccacc 3481630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 5907829 - 5907876
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  5907829 cataatatatgcaaggtccagggttcaaaccccggacaccaccaaaaa 5907876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 6423788 - 6423753
Alignment:
Q  21 atatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6423788 atatatgcaaggtccggggttcaaaccccggccacc 6423753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 8269399 - 8269360
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  8269399 cataatatatgcaaggtccggggttcaaaccccgaccacc 8269360  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 8736465 - 8736504
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  8736465 cataaaatatgcaaggtccggggttcaaaccccggccacc 8736504  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 12212325 - 12212372
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||  |||||||||||||||||| |||||||| ||||    
T  12212325 cataatatatgcaacgtccggggttcaaaccccgaccaccgccgaaaa 12212372  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 17139548 - 17139501
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||| |||| |||||||||||||||||| ||||| |||||||    
T  17139548 cataatatattcaaggtccggggttcaaaccccgaccaccaccaaaaa 17139501  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 25533003 - 25533038
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggc 52  Q
    ||||||||||||||| ||||||||||||||||||||    
T  25533003 cataatatatgcaaggtccggggttcaaaccccggc 25533038  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 34595902 - 34595941
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  34595902 cataatatatgcaaggtccggggttcaaacctcggccacc 34595941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 41973285 - 41973324
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  41973285 cataatatatgcaaggtccggggttcgaaccccggccacc 41973324  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 42045403 - 42045356
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| || || |||||||||||||||||| |||||||    
T  42045403 cataatatatgcaaggtctggagttcaaaccccggccaccaccaaaaa 42045356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 49432024 - 49431985
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  49432024 cataatatatgtaaggtccggggttcaaaccccggccacc 49431985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 12269015 - 12268977
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  12269015 cataatatatgcaaggtccggggttcaaaccccgaccac 12268977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 17537717 - 17537755
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  17537717 cataatatatacaagatccggtgttcaaaccccggccac 17537755  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 34632200 - 34632238
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  34632200 ataatatatgcaagatccgaggttcaaatcccggccacc 34632238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 37810557 - 37810511
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||||||| | |||||||||||||| ||||||| |||||||    
T  37810557 ataatatatgcaaggtacggggttcaaaccctggccaccaccaaaaa 37810511  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 41763186 - 41763148
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccac 55  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  41763186 cataaaatatgcaaggtccggggttcaaaccccggccac 41763148  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 2994789 - 2994826
Alignment:
Q  18 ataatatatgcaagatccggggttcaaaccccggccac 55  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  2994789 ataatatatgcaaggtccggggttcaaaccccgaccac 2994826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 3937553 - 3937521
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  3937553 cataatatatgcaaggtccggggttcaaacccc 3937521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 23730407 - 23730363
Alignment:
Q  20 aatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    |||||||||||| |||||||||| |||||||| |||| |||||||    
T  23730407 aatatatgcaaggtccggggttcgaaccccggacaccaccaaaaa 23730363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 24740864 - 24740832
Alignment:
Q  24 tatgcaagatccggggttcaaaccccggccacc 56  Q
    |||||||||||||||||||||||||| ||||||    
T  24740864 tatgcaagatccggggttcaaaccccagccacc 24740832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 28016221 - 28016189
Alignment:
Q  17 cataatatatgcaagatccggggttcaaacccc 49  Q
    ||||| |||||||||||||||||||||||||||    
T  28016221 cataaaatatgcaagatccggggttcaaacccc 28016189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 52086145 - 52086177
Alignment:
Q  23 atatgcaagatccggggttcaaaccccggccac 55  Q
    |||||||||||||||||||||||||||| ||||    
T  52086145 atatgcaagatccggggttcaaaccccgaccac 52086177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 3346 - 3299
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccaccgccaaaaa 64  Q
    ||||||||||||||| | ||||||||||||| ||||||| ||||||||    
T  3346 cataatatatgcaaggttcggggttcaaacctcggccactgccaaaaa 3299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 185293 - 185332
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggccacc 56  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  185293 cataaaatatgcaagatccggggttcaaaccccggtcacc 185332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 1196 - 1159
Alignment:
Q  17 cataatatatgcaagatccggggttcaaaccccggcca 54  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  1196 cataatatatgcaaggtccggggttcaaaccccagcca 1159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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