View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12623_low_9 (Length: 370)
Name: NF12623_low_9
Description: NF12623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12623_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 32739209 - 32739536
Alignment:
| Q |
19 |
attaagtgaagacgaaagacacaaattcgcatgtacatcacttacactctaatataagtgacccaagaaagggtagttgtccaactagtgtttaaaatta |
118 |
Q |
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| T |
32739209 |
attaagtgaagaggaaagacacaaattcgcatgtacattacttacactctaatataagtgacccaagaaagggtagttgtccaactagtgtttaaaatta |
32739308 |
T |
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| Q |
119 |
aattgatcaatctattttatttattttttgacaatattcaaacatgtaaaataatgtatataagtcattattttgaccaaaacctttatcatgtgtctat |
218 |
Q |
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| T |
32739309 |
aattgatcaatccattttatttattttttgacaatattcaaacatgtaaaataatctatataagtcattattttgaccaaaacctttatcatgtgtctgt |
32739408 |
T |
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| Q |
219 |
gttacaatattagtacttgctcaaagcaattgccggaatgatgaatatattgtttgagttagttattttgggtctgttatcaattttaatttctccatgt |
318 |
Q |
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| T |
32739409 |
gttacaatattagtacttgctcaaagcaattgccggaatgatgaatatattgtttgagttagttattttgggtctcttatcagttttaatttctccatgt |
32739508 |
T |
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| Q |
319 |
taaagaaccttgtaggagtcatagggta |
346 |
Q |
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| T |
32739509 |
taaagaaccttgtaggagtcatagggta |
32739536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 7795056 - 7795024
Alignment:
| Q |
72 |
ataagtgacccaagaaagggtagttgtccaact |
104 |
Q |
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| T |
7795056 |
ataagtgacccaagaaagggttgttgtccaact |
7795024 |
T |
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