View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_high_4 (Length: 486)
Name: NF12624_high_4
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 17231927 - 17231697
Alignment:
| Q |
18 |
aaaacagaagaacaaaatgtgtagaaatgtaccaagagaatcagaaaggaggaacttttggatgaagttgaaatctgttttgaaaaagatagaggataag |
117 |
Q |
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| T |
17231927 |
aaaacagaagaacaaaatgtgtagaaatgtaccaagagaatcagaaaggaggaacttttggatgaagttgaaatctgttttgaaaaatatagaggataag |
17231828 |
T |
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| Q |
118 |
gtataaggttccttcatgttgatcacaatcgaatctatctagcattccaaaatcattactattttttatcttgcataatatgatgatcacaaaatatgct |
217 |
Q |
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| T |
17231827 |
gtataaggttccttcatgttgatcataatcgaatctatctagcattccaaaatcattactattttttatgttgcataatatgatgatcacaaaatatgct |
17231728 |
T |
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| Q |
218 |
agagtctaaaagtcataactacagaacacag |
248 |
Q |
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| T |
17231727 |
agagtctaaaagtcataactactgaacacag |
17231697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 17230851 - 17230647
Alignment:
| Q |
242 |
aacacaggaattgccaaagatcgaaaagaagacaaagttagttcatgttaatagaggtagaagtatcagaacttaacttcccagagcaactacagatggt |
341 |
Q |
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| T |
17230851 |
aacacaagaattgccaaagatcgaaaagaagacaaagttagttcatgttaatagaggtagaagtatcagaacttaacttcccagagcaactacagatggt |
17230752 |
T |
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| Q |
342 |
tgtggatatgagcattttcagatttttagggggtcttaacagcaatttccaagcataataggcaaagcccattttttatggcagatcgcaattgagtaaa |
441 |
Q |
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| T |
17230751 |
tgtggatatgagcattttcagatttttagggggtcttaacagcaatttccaagcataataggcaaagcccattttttatggcagatcgcaattgagtaga |
17230652 |
T |
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| Q |
442 |
attta |
446 |
Q |
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| T |
17230651 |
attta |
17230647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 8275066 - 8275034
Alignment:
| Q |
18 |
aaaacagaagaacaaaatgtgtagaaatgtacc |
50 |
Q |
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| T |
8275066 |
aaaacagaagaacaaaatgtgtagaaatgtacc |
8275034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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