View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12624_high_5 (Length: 410)
Name: NF12624_high_5
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 194 - 397
Target Start/End: Original strand, 37603178 - 37603382
Alignment:
| Q |
194 |
aataatgaatcaaatccaatttgatcatatgcatactatgttcttatgaaaattaaatgggaacatggatacatctcacattccacaacaattactgaaa |
293 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
37603178 |
aataatgaatcaaacccaatttgatcatatgcatactatgttcttatgaaaattaaacgggaacatggatacatctcacagtccacaagaattactgaaa |
37603277 |
T |
|
| Q |
294 |
ttgatatcaaacttaca-nnnnnnnnaatcctttgatttgctagtctagaccacaattaaggtcatatgcacaattagaaattttctcaaccattgttgc |
392 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
37603278 |
ttgatatcaaacttacatttttttctattcctttgatttgctagtctagaccacaattcatgtcatatgtacaattagaaactttctcaacctctgttgc |
37603377 |
T |
|
| Q |
393 |
agtga |
397 |
Q |
| |
|
||||| |
|
|
| T |
37603378 |
agtga |
37603382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 37602934 - 37603112
Alignment:
| Q |
19 |
ttaatcacctgtaacatatgaaaagaaattgtattttagcatttatatattcgaatttccagcttcatacttggtttcaataaaactaagggattacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
37602934 |
ttaatcacctgtaacatatgaaaataaattgtattttagcatttatatatttgaatttgctgcttcatacttgttttcaataaaattaaggaattacata |
37603033 |
T |
|
| Q |
119 |
cataatatggatcaacttgcatttccatcttttgnnnnnnnntctcaaataaaatatgatgccacacatggctttaata |
197 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
37603034 |
cataatatggatcaacttgtatttccatctcttgaaaaaaaacctcaaatgaaatatgatgccacacatggcttgaata |
37603112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 194 - 397
Target Start/End: Complemental strand, 46557815 - 46557611
Alignment:
| Q |
194 |
aataatgaatcaaatccaatttgatcatatgcatactatgttcttatgaaaattaaatgggaacatggatacatctcacattccacaacaattactgaaa |
293 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
46557815 |
aataatgaatcaaacccaatttgatcatatgcatactatgttcttatgaaaattaaacgggaacatggatacatctcacagtccacaagaattactgaaa |
46557716 |
T |
|
| Q |
294 |
ttgatatcaaacttaca-nnnnnnnnaatcctttgatttgctagtctagaccacaattaaggtcatatgcacaattagaaattttctcaaccattgttgc |
392 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
46557715 |
ttgatatcaaacttacatttttttctattcctttgatttgctagtctagaccacaattcatgtcatatgtacaattagaaactttctcaacctctgttgc |
46557616 |
T |
|
| Q |
393 |
agtga |
397 |
Q |
| |
|
||||| |
|
|
| T |
46557615 |
agtga |
46557611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 46558059 - 46557881
Alignment:
| Q |
19 |
ttaatcacctgtaacatatgaaaagaaattgtattttagcatttatatattcgaatttccagcttcatacttggtttcaataaaactaagggattacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
46558059 |
ttaatcacctgtaacatatgaaaataaattgtattttagcatttatatatttgaatttgctgcttcatacttgttttcaataaaattaaggaattacata |
46557960 |
T |
|
| Q |
119 |
cataatatggatcaacttgcatttccatcttttgnnnnnnnntctcaaataaaatatgatgccacacatggctttaata |
197 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
46557959 |
cataatatggatcaacttgtatttccatctcttgaaaaaaaacctcaaatgaaatatgatgccacacatggcttgaata |
46557881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University