View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12624_high_9 (Length: 349)

Name: NF12624_high_9
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12624_high_9
NF12624_high_9
[»] chr7 (36 HSPs)
chr7 (204-341)||(21652719-21652856)
chr7 (205-331)||(21629531-21629657)
chr7 (208-330)||(21764599-21764718)
chr7 (205-328)||(15714198-15714321)
chr7 (209-328)||(21647431-21647550)
chr7 (205-326)||(21788809-21788924)
chr7 (208-334)||(21705185-21705305)
chr7 (205-341)||(21746064-21746197)
chr7 (205-324)||(21807621-21807734)
chr7 (207-328)||(21786089-21786204)
chr7 (205-334)||(21792544-21792667)
chr7 (123-205)||(39266831-39266913)
chr7 (297-334)||(21652606-21652643)
chr7 (238-295)||(21690039-21690096)
chr7 (297-341)||(21628741-21628785)
chr7 (297-341)||(21628801-21628845)
chr7 (297-341)||(21628861-21628905)
chr7 (297-341)||(21628921-21628965)
chr7 (297-341)||(21628981-21629025)
chr7 (297-341)||(21629041-21629085)
chr7 (297-341)||(21629101-21629145)
chr7 (297-341)||(21629161-21629205)
chr7 (297-341)||(21629221-21629265)
chr7 (297-341)||(21629281-21629325)
chr7 (297-341)||(21629341-21629385)
chr7 (297-341)||(21629461-21629505)
chr7 (297-341)||(21652659-21652703)
chr7 (205-334)||(21657005-21657131)
chr7 (236-291)||(21664707-21664762)
chr7 (297-334)||(21628688-21628725)
chr7 (297-341)||(21629401-21629445)
chr7 (205-265)||(21709039-21709099)
chr7 (207-294)||(21726427-21726514)
chr7 (94-201)||(48846848-48846955)
chr7 (207-291)||(21714795-21714879)
chr7 (207-287)||(21772551-21772631)
[»] chr3 (5 HSPs)
chr3 (69-201)||(9460587-9460719)
chr3 (27-189)||(29134422-29134591)
chr3 (132-201)||(43808767-43808836)
chr3 (121-201)||(19468804-19468884)
chr3 (143-201)||(50461046-50461104)
[»] chr1 (3 HSPs)
chr1 (69-189)||(51387009-51387128)
chr1 (132-207)||(22370294-22370369)
chr1 (140-207)||(38505951-38506018)
[»] chr6 (4 HSPs)
chr6 (17-200)||(18332413-18332595)
chr6 (94-192)||(21544814-21544912)
chr6 (132-208)||(34704048-34704124)
chr6 (132-206)||(12296193-12296264)
[»] chr4 (6 HSPs)
chr4 (136-201)||(13629553-13629618)
chr4 (150-208)||(47866606-47866664)
chr4 (145-206)||(19514443-19514504)
chr4 (145-206)||(37148424-37148485)
chr4 (132-189)||(16032725-16032782)
chr4 (144-192)||(16032236-16032284)
[»] chr2 (3 HSPs)
chr2 (132-206)||(41579249-41579323)
chr2 (123-201)||(28000674-28000752)
chr2 (94-163)||(39356711-39356780)
[»] scaffold0182 (2 HSPs)
scaffold0182 (281-326)||(25941-25986)
scaffold0182 (207-271)||(25984-26048)
[»] chr5 (1 HSPs)
chr5 (145-206)||(24118434-24118495)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 204 - 341
Target Start/End: Complemental strand, 21652856 - 21652719
Alignment:
Q  204 atattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtatt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||     
T  21652856 atattgtaccttggaattagatgtagttaggatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggttaaggtatc 21652757  T
Q  304 gatacactatgttctccttctccttccttcttcatctc 341  Q
    |||||||||||||||||||||||||||| || ||||||    
T  21652756 gatacactatgttctccttctccttcctcctccatctc 21652719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 21629657 - 21629531
Alignment:
Q  205 tattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattg 304  Q
    |||||||||||||||||||||||||| || |||| |||  |  ||||||||||||||||||| ||| ||| | |||||||||||||||||| ||||||||    
T  21629657 tattgtaccttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattg 21629558  T
Q  305 atacactatgttctccttctccttcct 331  Q
    || ||||||||||||||||||||||||    
T  21629557 atgcactatgttctccttctccttcct 21629531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 21764718 - 21764599
Alignment:
Q  208 tgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattgata 307  Q
    ||||||||||| || |||||||| || |||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||    ||||||||    
T  21764718 tgtaccttggacttggatgtagtgaggatgactttatgctgaagatctagaagatgagtgggtgtctctgactgtgactcatttgtta---ttattgata 21764622  T
Q  308 cactatgttctccttctccttcc 330  Q
    |||||||||||||||||||||||    
T  21764621 cactatgttctccttctccttcc 21764599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 15714321 - 15714198
Alignment:
Q  205 tattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattg 304  Q
    |||| ||||||||||||||||||| | || ||   |||| || | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  15714321 tattataccttggaattagatgtaatgaggatatatttacgctgtagatcaagaagatgagtgggtgtctctgactgtgactcatttcgtaatggtattg 15714222  T
Q  305 atacactatgttctccttctcctt 328  Q
    ||||||||| || |||||||||||    
T  15714221 atacactatattgtccttctcctt 15714198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 21647550 - 21647431
Alignment:
Q  209 gtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattgatac 308  Q
    |||||||||||||||||| | | || |||| |||| || ||||||||| ||||||||||||||||| ||| || |||||| |||||||||||||||||||    
T  21647550 gtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatgagtgggtgtctctgattgggactcacttggtaatggtattgatac 21647451  T
Q  309 actatgttctccttctcctt 328  Q
    ||| ||||||||||||||||    
T  21647450 actgtgttctccttctcctt 21647431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 326
Target Start/End: Complemental strand, 21788924 - 21788809
Alignment:
Q  205 tattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattg 304  Q
    |||||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||||||| | |||| ||||||||      || |||||    
T  21788924 tattgtaccttggaattagatgtagtgaggatgattttacgctgaagatcaagaagatgagtgggtgtctctaactgggactcatt------tgttattg 21788831  T
Q  305 atacactatgttctccttctcc 326  Q
    ||||||||||||||||||||||    
T  21788830 atacactatgttctccttctcc 21788809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 21705305 - 21705185
Alignment:
Q  208 tgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattgata 307  Q
    |||||||||||||||||||| || || ||||||||| |  |||||||||||||||| |||||||| | ||||||||||||||||      ||||||||||    
T  21705305 tgtaccttggaattagatgtggtgaggatgattttacgttgaagatcaagaagatgtgtgggtgtttctgactgtgactcattt------ggtattgata 21705212  T
Q  308 cactatgttctccttctccttccttct 334  Q
    ||||||||||||| | ||| |||||||    
T  21705211 cactatgttctccatttccctccttct 21705185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 21746197 - 21746064
Alignment:
Q  205 tattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtggg---tgtctttgactgtgactcatttggtaatggta 301  Q
    |||||||||||||| || |||||||| ||  ||| ||||||||||||||||||||||||||||||   ||||| ||| |||||||||||      || ||    
T  21746197 tattgtaccttggacttggatgtagtgaggttgagtttatgcagaagatcaagaagatgagtgggtattgtctctgaatgtgactcatt------tgtta 21746104  T
Q  302 ttgatacactatgttctccttctccttccttcttcatctc 341  Q
    |||||||| ||||||||||| ||||||||| || ||||||    
T  21746103 ttgatacattatgttctcctcctccttcctcctccatctc 21746064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 21807621 - 21807734
Alignment:
Q  205 tattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattg 304  Q
    |||| ||||||||||||||||||||  ||||||| |||| || ||| ||||||||||||||| ||||||| ||||||  |||||||      || |||||    
T  21807621 tattttaccttggaattagatgtagggagcatgagtttacgctgaacatcaagaagatgagttggtgtctctgactgccactcatt------tgttattg 21807714  T
Q  305 atacactatgttctccttct 324  Q
    |||||||||||||| |||||    
T  21807715 atacactatgttcttcttct 21807734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 21786204 - 21786089
Alignment:
Q  207 ttgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattgat 306  Q
    |||||||||||   |||||||| | || ||||| ||| || |||||||||||||||||  |||||||| | |||||||||||||      | ||||||||    
T  21786204 ttgtaccttggttgtagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatt------tcgtattgat 21786111  T
Q  307 acactatgttctccttctcctt 328  Q
    | ||||||||||||||||||||    
T  21786110 aaactatgttctccttctcctt 21786089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 21792667 - 21792544
Alignment:
Q  205 tattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggtaatggtattg 304  Q
    |||||||||||||||||||||| ||| || || |||||| |  | ||||||||||||||| |||||| || | || |||||||||       ||| ||||    
T  21792667 tattgtaccttggaattagatgcagtgaggatcattttacgatgcagatcaagaagatgattgggtggctctaacagtgactcat------ctggcattg 21792574  T
Q  305 atacactatgttctccttctccttccttct 334  Q
    |||||||||||| ||||||||||| |||||    
T  21792573 atacactatgttgtccttctcctttcttct 21792544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 39266831 - 39266913
Alignment:
Q  123 cattagtatttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagat 205  Q
    |||||| | |||||||  ||| ||||||||||||||||||| | |||| | ||| |||||||||||| |||||||||||||||    
T  39266831 cattagcaattaatgaaggattattagagggaaaaattaggttaaatgatagcaagacctaataagcatttagaataagagat 39266913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 21652643 - 21652606
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttct 334  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21652643 tggtattgatacactatgttctccttctccttccttct 21652606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 21690096 - 21690039
Alignment:
Q  238 attttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggta 295  Q
    ||||| ||| |||||||||||||||||||||||||||| || ||||| ||||||||||    
T  21690096 attttgtgctgaagatcaagaagatgagtgggtgtcttcgaatgtgattcatttggta 21690039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21628785 - 21628741
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21628785 tggtattgatacactatgttctccttctccttcctcctccatctc 21628741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21628845 - 21628801
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21628845 tggtattgatacactatgttctccttctccttcctcctccatctc 21628801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21628905 - 21628861
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21628905 tggtattgatacactatgttctccttctccttcctcctccatctc 21628861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21628965 - 21628921
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21628965 tggtattgatacactatgttctccttctccttcctcctccatctc 21628921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629025 - 21628981
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21629025 tggtattgatacactatgttctccttctccttcctcctccatctc 21628981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629085 - 21629041
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21629085 tggtattgatacactatgttctccttctccttcctcctccatctc 21629041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629145 - 21629101
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21629145 tggtattgatacactatgttctccttctccttcctcctccatctc 21629101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629205 - 21629161
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21629205 tggtattgatacactatgttctccttctccttcctcctccatctc 21629161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629265 - 21629221
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21629265 tggtattgatacactatgttctccttctccttcctcctccatctc 21629221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629325 - 21629281
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21629325 tggtattgatacactatgttctccttctccttcctcctccatctc 21629281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629385 - 21629341
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21629385 tggtattgatacactatgttctccttctccttcctcctccatctc 21629341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629505 - 21629461
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21629505 tggtattgatacactatgttctccttctccttcctcctccatctc 21629461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21652703 - 21652659
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  21652703 tggtattgatacactatgttctccttctccttcctcctccatctc 21652659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 21657131 - 21657005
Alignment:
Q  205 tattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtggg---tgtctttgactgtgactcatttggtaatggta 301  Q
    |||||||||||||||| ||||||||| || |||| |||  |  ||||||||||||||||||||||   ||||| ||| ||||||||||       || ||    
T  21657131 tattgtaccttggaataagatgtagtgaggatgagtttccgttgaagatcaagaagatgagtgggtattgtctctgattgtgactcat------ctgcta 21657038  T
Q  302 ttgatacactatgttctccttctccttccttct 334  Q
    ||||| ||||||||||||| ||||||| |||||    
T  21657037 ttgatgcactatgttctccatctcctttcttct 21657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 21664762 - 21664707
Alignment:
Q  236 tgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcattt 291  Q
    |||||||| ||||||||||||||||||||||||||||||    |||||||||||||    
T  21664762 tgattttacgcagaagatcaagaagatgagtgggtgtctccagctgtgactcattt 21664707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 21628725 - 21628688
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttct 334  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  21628725 tggtattaatacactatgttctccttctccttccttct 21628688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 21629445 - 21629401
Alignment:
Q  297 tggtattgatacactatgttctccttctccttccttcttcatctc 341  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||    
T  21629445 tggtattaatacactatgttctccttctccttcctcctccatctc 21629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 21709099 - 21709039
Alignment:
Q  205 tattgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgag 265  Q
    |||||||||||||||||||| ||||| || | ||| |||||| ||||||||| ||||||||    
T  21709099 tattgtaccttggaattagaagtagtgaggaggatattatgctgaagatcaaaaagatgag 21709039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 21726514 - 21726427
Alignment:
Q  207 ttgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggt 294  Q
    |||||||||||   |||||||| | || ||||| ||| || || ||||||||||||||  ||||||||||||||| ||||||| ||||    
T  21726514 ttgtaccttggttgtagatgtaatgaggatgatattacgccgacgatcaagaagatgaaagggtgtctttgactgggactcatctggt 21726427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 48846848 - 48846955
Alignment:
Q  94 ataggagggaaatattttagagttgtatgcattagtatttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagctttt 193  Q
    ||||||||||||||||  || ||||| | |||||| ||||||||| | || | | ||||||||||||||| | ||   | ||| |||||||||||| |||    
T  48846848 ataggagggaaatattggagggttgtttccattagcatttaatgacatattagtggagggaaaaattaggttaaactatagcaagacctaataagcattt 48846947  T
Q  194 agaataag 201  Q
    ||||||||    
T  48846948 agaataag 48846955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 21714879 - 21714795
Alignment:
Q  207 ttgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcattt 291  Q
    |||||||||||   |||||||| | || ||||| ||| |  |||||||||||||||||  |||||||| | ||||||||||||||    
T  21714879 ttgtaccttggttgtagatgtaatgaggatgatattacgttgaagatcaagaagatgaaagggtgtctctaactgtgactcattt 21714795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 21772631 - 21772551
Alignment:
Q  207 ttgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactc 287  Q
    |||||||||||   |||||||| | || ||| | ||| || |||||||||||||||||  |||||||| ||||||||||||    
T  21772631 ttgtaccttggttgtagatgtaatgaggatggtattacgctgaagatcaagaagatgaaagggtgtctctgactgtgactc 21772551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 9460719 - 9460587
Alignment:
Q  69 aatttgaaattcaaattgaacttgcataggagggaaatattttagagttgtatgcattagtatttaatgatagataa-ttagagggaaaaattagggtta 167  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  |||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  9460719 aatttgaaattcaaattgaactttcataggagggaaatattttaggattgtatgc-ttagcatttaatgatagataaattagagggaaaaattagggtta 9460621  T
Q  168 atggttgcatgacctaataagcttttagaataag 201  Q
    |||||||||||||||||||||| |||||||||||    
T  9460620 atggttgcatgacctaataagcatttagaataag 9460587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 29134591 - 29134422
Alignment:
Q  27 gagtgggagattatttgggcttgcatgggatacacgaaag-tca-------atttgaaattcaaattgaacttgcataggagggaaatattttagagttg 118  Q
    |||| ||||||||||||||||||||| |||||||| |||| |||       ||||||||||||||||| || | |||| ||||||||||||||||  |||    
T  29134591 gagtaggagattatttgggcttgcataggatacaccaaaggtcagtttgaaatttgaaattcaaattgtacgttcatacgagggaaatattttaggattg 29134492  T
Q  119 tatgcattagtatttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagc 189  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29134491 tatgc-ttagcatttaatgatagataattagagggaaaaattagggttaatggttgcatgatctaataagc 29134422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 43808767 - 43808836
Alignment:
Q  132 ttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataag 201  Q
    ||||||| || | |||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||    
T  43808767 ttaatgacagcttattagagggaaaaattagggttaatgatagcatgacctaataagcatttagagtaag 43808836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 19468884 - 19468804
Alignment:
Q  121 tgcattagtatttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataag 201  Q
    |||||||| | ||||||| |||| | ||||||||||||||||| ||| || ||||| |||||||||||| |||||| ||||    
T  19468884 tgcattagcaattaatgacagattagtagagggaaaaattaggtttagtgcttgcaagacctaataagcatttagagtaag 19468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 50461104 - 50461046
Alignment:
Q  143 taattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataag 201  Q
    ||||||||||||||||||||| | |||||||||  |||||||||||| |||||| ||||    
T  50461104 taattagagggaaaaattaggttaaatggttgctagacctaataagcatttagagtaag 50461046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 51387009 - 51387128
Alignment:
Q  69 aatttgaaattcaaattgaacttgcataggagggaaatattttagagttgtatgcattagtatttaatgatagataattagagggaaaaattagggttaa 168  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||  |||||||| |||| |||||||| ||||||||||||||||||||||||||||||    
T  51387009 aatttgaaatttaaattgaactttcataggagggaaatattttaggattgtatgc-ttagcatttaatgttagataattagagggaaaaattagggttaa 51387107  T
Q  169 tggttgcatgacctaataagc 189  Q
    |||||||||||||||||||||    
T  51387108 tggttgcatgacctaataagc 51387128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 22370369 - 22370294
Alignment:
Q  132 ttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagatat 207  Q
    ||||||| || | |||||||||||||||||||||||||| | | |||||||||||||| |||||| |||| |||||    
T  22370369 ttaatgacagcttattagagggaaaaattagggttaatgatagtatgacctaataagcatttagagtaagggatat 22370294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 38506018 - 38505951
Alignment:
Q  140 agataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagatat 207  Q
    |||| ||||||||||||| ||||| | | |||| |||||||||||||||| ||||||||||| |||||    
T  38506018 agattattagagggaaaatttaggttaagtggtagcatgacctaataagcatttagaataagggatat 38505951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 18332413 - 18332595
Alignment:
Q  17 aaatcatgctgagtgggagattatttgggcttgcatgggatacacgaaa-gtcaatttgaaatt-------caaattgaacttgcataggagggaaatat 108  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||| |||||       ||||||||||||||||||||| ||| | |    
T  18332413 aaatcatgctgagtggatgattatttgggcttgcatgggatacaccaaaagtcaattttaaattttaaattcaaattgaacttgcataggagcgaatttt 18332512  T
Q  109 tttagagttgtatgcattagtatttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataa 200  Q
    |||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  18332513 tttag---------cattagcatttaatgatagataattagagggaaaaattagggttaatggttgcatgatttaataagcatttagaataa 18332595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 21544814 - 21544912
Alignment:
Q  94 ataggagggaaatattttagagttgtatgcattagtatttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttt 192  Q
    ||||||||||||| |||||| |||||||| ||||| ||||||||| |||| ||||||||||||||||||| |||  ||||||| |||||||||| ||||    
T  21544814 ataggagggaaattttttagggttgtatggattagcatttaatgacagattattagagggaaaaattaggtttagaggttgcaagacctaataaacttt 21544912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 34704124 - 34704048
Alignment:
Q  132 ttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagatatt 208  Q
    |||||| ||||||||||||||||||||||||| ||| | || ||| |||||||||||| ||||||||||| ||||||    
T  34704124 ttaatgctagataattagagggaaaaattaggtttagtagtagcaagacctaataagcatttagaataagggatatt 34704048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 12296264 - 12296193
Alignment:
Q  132 ttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagata 206  Q
    |||||||| ||| ||||||||||||||||||| |||   || ||| ||||||||||||||||| |||||| ||||    
T  12296264 ttaatgatggatgattagagggaaaaattaggttta---gtagcaagacctaataagcttttaaaataagggata 12296193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 13629618 - 13629553
Alignment:
Q  136 tgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  13629618 tgatagataattagagggaaaaattagggttaatggttgcatgacctgataagcatttagaataag 13629553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 47866606 - 47866664
Alignment:
Q  150 agggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagatatt 208  Q
    |||||||||||||| ||| || ||||| |||||||||||| ||||||||||||||||||    
T  47866606 agggaaaaattaggtttagtgcttgcaagacctaataagcatttagaataagagatatt 47866664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 19514504 - 19514443
Alignment:
Q  145 attagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagata 206  Q
    ||||||||||||||||||| | || ||||||| ||||| |||||||||||||||||| ||||    
T  19514504 attagagggaaaaattaggttaaaaggttgcaagaccttataagcttttagaataagtgata 19514443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 37148424 - 37148485
Alignment:
Q  145 attagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagata 206  Q
    |||||||| ||||||||||||||||| | |||||||||||||||| ||| || |||| ||||    
T  37148424 attagaggaaaaaattagggttaatgatagcatgacctaataagcatttggagtaagggata 37148485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 16032782 - 16032725
Alignment:
Q  132 ttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagc 189  Q
    |||||| ||||||||| | |||||| |||||| ||| |||| ||||||||||||||||    
T  16032782 ttaatgctagataatttgcgggaaatattaggtttagtggtagcatgacctaataagc 16032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 16032236 - 16032284
Alignment:
Q  144 aattagagggaaaaattagggttaatggttgcatgacctaataagcttt 192  Q
    |||||||||||||| ||||| ||||  |||||| |||||||||||||||    
T  16032236 aattagagggaaaatttaggtttaagtgttgcaagacctaataagcttt 16032284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 41579323 - 41579249
Alignment:
Q  132 ttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagata 206  Q
    ||||||| || | |||||||||||||||||||||||||| | |||||||||||||||| |||||| |||| ||||    
T  41579323 ttaatgacaggttattagagggaaaaattagggttaatgatagcatgacctaataagcatttagagtaagggata 41579249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 28000752 - 28000674
Alignment:
Q  123 cattagtatttaatgatagataattagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataag 201  Q
    |||||| | ||||||| || | ||| |||||||||||||||||||||| | ||||||||||| |||| |||||||||||    
T  28000752 cattagcaattaatgaaaggttatttgagggaaaaattagggttaatgatagcatgacctaacaagcatttagaataag 28000674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 39356780 - 39356711
Alignment:
Q  94 ataggagggaaatattttagagttgtatgcattagtatttaatgatagataattagagggaaaaattagg 163  Q
    ||||||||||||||| |||| ||| | || ||||| | ||||||| |||| |||||||||||||||||||    
T  39356780 ataggagggaaatatattagggttatgtggattagcaattaatgacagattattagagggaaaaattagg 39356711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 25986 - 25941
Alignment:
Q  281 gtgactcatttggtaatggtattgatacactatgttctccttctcc 326  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  25986 gtgactcatttggtaatggtattgatacactatattctccttctcc 25941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 26048 - 25984
Alignment:
Q  207 ttgtaccttggaattagatgtagttagcatgattttatgcagaagatcaagaagatgagtgggtg 271  Q
    |||||||||||| || | |||||| ||  ||| |||| ||||| |||||||||||||||||||||    
T  26048 ttgtaccttggacttgggtgtagtgaggttgagtttacgcagatgatcaagaagatgagtgggtg 25984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 24118495 - 24118434
Alignment:
Q  145 attagagggaaaaattagggttaatggttgcatgacctaataagcttttagaataagagata 206  Q
    ||||||||||||||||||| | || ||||||| ||||| ||||||||| ||| |||| ||||    
T  24118495 attagagggaaaaattaggttaaaaggttgcaagaccttataagctttcagagtaagtgata 24118434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University