View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_low_1 (Length: 676)
Name: NF12624_low_1
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 617; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 14 - 658
Target Start/End: Complemental strand, 38942939 - 38942295
Alignment:
| Q |
14 |
agagaaagagaaaggcacaacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942939 |
agagaaagagaaaggcacaacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctc |
38942840 |
T |
|
| Q |
114 |
aagctggtagaatcaaaactatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacagagtatgtttttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942839 |
aagctggtagaatcaaaactatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacagagtatgtttttt |
38942740 |
T |
|
| Q |
214 |
gttttaatttgttgtccagattcgcatcaaaattatagaaattgttcaagaattactaactctttatatgaaacagaatgctatgttcgtgccacactac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
38942739 |
gttttaatttgttgtccagattcgcatcaaaattatagaaattgttcaagaattactaacgctttatatgaaacagaatgctatgttcgttccacactac |
38942640 |
T |
|
| Q |
314 |
aatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggcaacactgtgttcgatgaggaactagaag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942639 |
aatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggcaacactgtgttcgatgaggaactagaag |
38942540 |
T |
|
| Q |
414 |
ctggtcgtgcattgatcgtgccacaaaactttgctgttgcagcaaaatcagtgagtgacaggttcacttatgtttcattcaagaccaatgataatgccgc |
513 |
Q |
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| T |
38942539 |
ctggccgtgcattgatcgtgccacaaaactttgctgttgcagcaaaatcagtgagcgacaggttcacttatgtttcattcaagaccaatgataatgccgc |
38942440 |
T |
|
| Q |
514 |
gattgccaggcttgctgggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaacatggacaggaatgaggcaaggcagctc |
613 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942439 |
aattgccaggcttgcagggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaacatggacaggaatgaggcaaggcagctc |
38942340 |
T |
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| Q |
614 |
aaaatcaacaatctctttaaatttctagttccaccccgtgagtcc |
658 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38942339 |
aaaaacaacaatctctttaaatttctagttccaccccgtgagtcc |
38942295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 286 - 658
Target Start/End: Complemental strand, 38950103 - 38949731
Alignment:
| Q |
286 |
acagaatgctatgttcgtgccacactacaatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggc |
385 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||| || ||||||||||||||||||||||| |
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| T |
38950103 |
acagaatgctatgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgcacggttacaagtagtgaactgcaatggc |
38950004 |
T |
|
| Q |
386 |
aacactgtgttcgatgaggaactagaagctggtcgtgcattgatcgtgccacaaaactttgctgttgcagcaaaatcagtgagtgacaggttcacttatg |
485 |
Q |
| |
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||||||||||| |||| ||||| ||||| ||||| | ||||| || |||||||| |||||||| || ||||||||| |||| ||||||||| |||| |
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| T |
38950003 |
aacactgtgtttgatggcgaacttgaagccggtcgcgtgttgatagtaccacaaaattttgctgtagctgcaaaatcaatgagcgacaggttccagtatg |
38949904 |
T |
|
| Q |
486 |
tttcattcaagaccaatgataatgccgcgattgccaggcttgctgggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaa |
585 |
Q |
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| ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |
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| T |
38949903 |
tgtcattcaagaccaatgataatgctgccattgctaggcttgcagggacacaatccactctaagtggtgtgccaatggatgtgcttgcagctacatacaa |
38949804 |
T |
|
| Q |
586 |
catggacaggaatgaggcaaggcagctcaaaatcaacaatctctttaaatttctagttccaccccgtgagtcc |
658 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |
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| T |
38949803 |
catggacaggaatgaggcaaggcagctcaagaacaacaatctctataaatttctagttccaccccgtgagtcc |
38949731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 38950358 - 38950188
Alignment:
| Q |
31 |
caacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaa |
130 |
Q |
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||||||||||| ||||||||||||||| || || |||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38950358 |
caacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaa |
38950259 |
T |
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| Q |
131 |
actatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacag |
201 |
Q |
| |
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||| |||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
38950258 |
actgtcaccagctttgacctcccagctctaaggtggctcagactcagtgctgaacatggaactctccacag |
38950188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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