View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_low_13 (Length: 294)
Name: NF12624_low_13
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 16162489 - 16162712
Alignment:
| Q |
19 |
agattatgacatgtttcttttatctttttaatttgtagttgctgatgtctcagttatcttttatgtcttcctctgtgtgtgtgttgtagctgattcaagt |
118 |
Q |
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| T |
16162489 |
agattatgacatgtttcttttatctttttaatttgtggttgctgatgtctcagttatcttttatgtcttcccctgtgtgtgtgttgtagctgattcaagt |
16162588 |
T |
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| Q |
119 |
tgacgtattacttggtgtggtttttgtctgctaccttatgcttggtgttatgattatttgattttaaattgatgtttgccttgaaacatttgt-accttg |
217 |
Q |
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|||| | ||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| || |
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| T |
16162589 |
tgacttgttaattggtgtggtttttgtctcctaccttgtgcttggtgttgtgattatttgattttaaattgatgttttccttgaaacatttgtaaccctg |
16162688 |
T |
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| Q |
218 |
ctttaaatttatcttgattttgaa |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
16162689 |
ctttaaatttatcttgattttgaa |
16162712 |
T |
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