View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_low_15 (Length: 285)
Name: NF12624_low_15
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 33 - 269
Target Start/End: Original strand, 39412644 - 39412878
Alignment:
| Q |
33 |
aaagaaccagacaccatttaaagaaaacaaatttgcaaaacttgcaaaccatatttgaaacacagttctaagattcagcattctcaaagtaggatatcaa |
132 |
Q |
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||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39412644 |
aaagaaccaaacaccaaataaagaaaacaaatgtgaaaaacttgcaaaccatatttgaaacacggttctaagattcagcattctcaaagtaggatatcaa |
39412743 |
T |
|
| Q |
133 |
attcgaacctattaaaaaacatctgtacaatcacacaaatatgttgtatataattttttctcaagcaccgatagctaacacttgcaatatgaatttaaga |
232 |
Q |
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|||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39412744 |
attcaaacctattcaaaaacatctgtacaatcacac--atatgttgtatataattttttctcaaacaccgatagctaacacttgcaatatgaatttaaga |
39412841 |
T |
|
| Q |
233 |
gtaggtacaatcacacttgcaatatggatttgataat |
269 |
Q |
| |
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| T |
39412842 |
gaaggtacaatcacacttgcaatatggatttgataat |
39412878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 39153693 - 39153506
Alignment:
| Q |
53 |
aagaaaacaaatttgcaaaacttgcaaaccatatttgaaacacagttctaagattcagcattctcaaagtaggatatcaaattcgaacctattaaaaaac |
152 |
Q |
| |
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|||||||| ||| || || ||||| ||||||||||||||||| |||||||||||| ||||||||| ||| |||| ||||| |||| |||| || ||| |
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| T |
39153693 |
aagaaaacgaatgtgaaacacttgtaaaccatatttgaaacatgtttctaagattcaaaattctcaaaatagaatattaaatttgaacgtattcaagaac |
39153594 |
T |
|
| Q |
153 |
atctgtacaatcacacaaatatgttgtatataatt--ttttctcaagcaccgatagctaacacttgcaatatgaatttaagagtaggt |
238 |
Q |
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|| |||| ||||||||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
39153593 |
attcgtacgttcacacaaatatgttttatataattttttttctcaagcattgatagccaacacttgcaatatgaatttaagagaaggt |
39153506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 39472261 - 39472461
Alignment:
| Q |
33 |
aaagaaccagacaccatttaaagaaaacaaatttgcaaaacttgcaaaccatatttgaaacacagttctaagattcagcattctcaaagtaggatatcaa |
132 |
Q |
| |
|
||||||||||||| || |||| ||||||| || || || ||||||||||||||||| |||||| |||||||||||| |||||||||| |||||||| || |
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| T |
39472261 |
aaagaaccagacatcaattaa-gaaaacagatgtgaaacacttgcaaaccatatttcaaacacggttctaagattccacattctcaaaataggatataaa |
39472359 |
T |
|
| Q |
133 |
attcgaacctattaaaaaacatctgtacaatcacacaaatatgttgtatataa-ttttttctcaagcaccgatagctaacacttgcaatatgaatttaag |
231 |
Q |
| |
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|||| || |||| || |||| |||||||| ||||||||||||| ||| ||| |||||||||||||| | |||||||||||||||| || |||| || |
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| T |
39472360 |
attcaaaaatattcaataacaattgtacaatgacacaaatatgttttatttaatttttttctcaagcatcagcagctaacacttgcaatttggattttag |
39472459 |
T |
|
| Q |
232 |
ag |
233 |
Q |
| |
|
|| |
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|
| T |
39472460 |
ag |
39472461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 39139292 - 39139147
Alignment:
| Q |
88 |
tgaaacacagttctaagattcagcattctcaaagtaggatatcaaattcgaacctattaaaaaacatctgtacaatcacacaaatatgttgtatataatt |
187 |
Q |
| |
|
|||||||| ||||||||| || |||||||||| |||||||| ||||| |||||| | || ||||| |||| ||||||| |||||||||| |||||||| |
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| T |
39139292 |
tgaaacacggttctaagagtccacattctcaaaataggatataaaatttgaacctcatcaagaacatttgtataatcacataaatatgttgcatataatt |
39139193 |
T |
|
| Q |
188 |
ttttctcaagcaccgatagctaacacttgcaatatgaatttaagag |
233 |
Q |
| |
|
|||||||||||| | | || ||||||| ||||||| ||| ||||| |
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|
| T |
39139192 |
ttttctcaagcatcaagagataacactaacaatatggattcaagag |
39139147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 39452616 - 39452533
Alignment:
| Q |
150 |
aacatctgtacaatcacacaaatatgttgtatataattttttctcaagcaccgatagctaacacttgcaatatgaatttaagag |
233 |
Q |
| |
|
||||| |||||| ||||||||||||| || ||||||||||||| |||||| | ||||||||| ||||||||| |||||||||| |
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| T |
39452616 |
aacatttgtacagtcacacaaatatgatgaatataattttttcccaagcatcaatagctaacggttgcaatattaatttaagag |
39452533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 39421035 - 39421081
Alignment:
| Q |
74 |
ttgcaaaccatatttgaaacacagttctaagattcagcattctcaaa |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| ||||| |
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| T |
39421035 |
ttgcaaaccatatttgaaacatggttctaagattcaacattatcaaa |
39421081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39412664 - 39412696
Alignment:
| Q |
1 |
aagaaaacaaatgtgaaaaacttgcaagccata |
33 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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| T |
39412664 |
aagaaaacaaatgtgaaaaacttgcaaaccata |
39412696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 19809548 - 19809437
Alignment:
| Q |
88 |
tgaaacacagttctaagattcagcattctcaaagtaggatatcaaattcgaacctattaaaaaacatctgtacaatcacacaaatatgttgtatataatt |
187 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||| ||||| |||||| | || ||||| |||| ||||||||||||||||||||||||||| |
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| T |
19809548 |
tgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataatt |
19809449 |
T |
|
| Q |
188 |
ttttctcaagca |
199 |
Q |
| |
|
|||||||||||| |
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|
| T |
19809448 |
ttttctcaagca |
19809437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 45343365 - 45343282
Alignment:
| Q |
150 |
aacatctgtacaatcacacaaatatgttgtatataattttttctcaagcaccgatagctaacacttgcaatatgaatttaagag |
233 |
Q |
| |
|
||||| ||||||| |||||||||||||| || |||| |||||||||| | | || |||||||||| ||||||| ||||||||| |
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| T |
45343365 |
aacatttgtacaaccacacaaatatgttctacataagtttttctcaaaaatcaatggctaacactttcaatatggatttaagag |
45343282 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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